Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KPA27_RS00800 Genome accession   NZ_CP076517
Coordinates   130188..130583 (+) Length   131 a.a.
NCBI ID   WP_024409105.1    Uniprot ID   A0A0Z8WT08
Organism   Streptococcus suis strain 39565     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 125188..135583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS00770 (KPA27_00770) pepA 125869..126930 (-) 1062 WP_024409100.1 glutamyl aminopeptidase -
  KPA27_RS00775 (KPA27_00775) - 127077..127361 (+) 285 WP_044769538.1 DUF4651 domain-containing protein -
  KPA27_RS00780 (KPA27_00780) - 127358..127678 (+) 321 WP_024386278.1 thioredoxin family protein -
  KPA27_RS00785 (KPA27_00785) - 127723..128679 (+) 957 WP_044769422.1 DUF1002 domain-containing protein -
  KPA27_RS00790 (KPA27_00790) ytpR 128697..129320 (+) 624 WP_202847585.1 YtpR family tRNA-binding protein -
  KPA27_RS00795 (KPA27_00795) - 129354..130133 (-) 780 WP_202847586.1 DUF2785 domain-containing protein -
  KPA27_RS00800 (KPA27_00800) ssbA 130188..130583 (+) 396 WP_024409105.1 single-stranded DNA-binding protein Machinery gene
  KPA27_RS00805 (KPA27_00805) - 131264..132466 (-) 1203 WP_301183393.1 IS110 family transposase -
  KPA27_RS00810 (KPA27_00810) - 132700..132840 (-) 141 WP_172002465.1 hypothetical protein -
  KPA27_RS00815 (KPA27_00815) groES 133037..133318 (+) 282 WP_014637330.1 co-chaperone GroES -
  KPA27_RS00820 (KPA27_00820) groL 133329..134951 (+) 1623 WP_024393522.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14824.68 Da        Isoelectric Point: 5.0026

>NTDB_id=576104 KPA27_RS00800 WP_024409105.1 130188..130583(+) (ssbA) [Streptococcus suis strain 39565]
MYNKVIAIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=576104 KPA27_RS00800 WP_024409105.1 130188..130583(+) (ssbA) [Streptococcus suis strain 39565]
ATGTATAATAAAGTTATTGCAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGTAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGTAACCACTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGTCGGGCTCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCTGACTTGGTTCTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374