Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KNV92_RS12710 Genome accession   NZ_CP076514
Coordinates   2626361..2627113 (-) Length   250 a.a.
NCBI ID   WP_094247691.1    Uniprot ID   -
Organism   Bacillus velezensis strain WB     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2621361..2632113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV92_RS12685 (KNV92_12685) mreC 2621797..2622660 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  KNV92_RS12690 (KNV92_12690) mreB 2622691..2623704 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KNV92_RS12695 (KNV92_12695) radC 2623796..2624491 (-) 696 WP_007408165.1 DNA repair protein RadC -
  KNV92_RS12700 (KNV92_12700) - 2624523..2625092 (-) 570 WP_070082167.1 nucleoside triphosphate pyrophosphatase -
  KNV92_RS12705 (KNV92_12705) - 2625233..2626234 (-) 1002 WP_146277259.1 SPOR domain-containing protein -
  KNV92_RS12710 (KNV92_12710) comC 2626361..2627113 (-) 753 WP_094247691.1 A24 family peptidase Machinery gene
  KNV92_RS12715 (KNV92_12715) - 2627253..2628545 (-) 1293 WP_094247690.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KNV92_RS12720 (KNV92_12720) - 2628604..2631246 (-) 2643 WP_094247689.1 valine--tRNA ligase -
  KNV92_RS12725 (KNV92_12725) - 2631699..2631890 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27030.62 Da        Isoelectric Point: 9.2521

>NTDB_id=576050 KNV92_RS12710 WP_094247691.1 2626361..2627113(-) (comC) [Bacillus velezensis strain WB]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLTALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=576050 KNV92_RS12710 WP_094247691.1 2626361..2627113(-) (comC) [Bacillus velezensis strain WB]
ATGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCCTGCAAAGAGGAAGGTGCAGAAACTGCCGTGCGAAGCTGTCAGTGATGTATCCGGCAGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAACCGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588