Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KNV92_RS11875 Genome accession   NZ_CP076514
Coordinates   2474617..2475384 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain WB     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2469617..2480384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV92_RS11855 (KNV92_11855) - 2469819..2470631 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  KNV92_RS11860 (KNV92_11860) ccpN 2470657..2471295 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  KNV92_RS11865 (KNV92_11865) glyS 2471396..2473435 (-) 2040 WP_094247723.1 glycine--tRNA ligase subunit beta -
  KNV92_RS11870 (KNV92_11870) glyQ 2473428..2474315 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  KNV92_RS11875 (KNV92_11875) recO 2474617..2475384 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  KNV92_RS11880 (KNV92_11880) - 2475421..2475564 (-) 144 WP_007408286.1 YqzL family protein -
  KNV92_RS11885 (KNV92_11885) era 2475720..2476625 (-) 906 WP_007408285.1 GTPase Era -
  KNV92_RS11890 (KNV92_11890) - 2476606..2477016 (-) 411 WP_094247722.1 cytidine deaminase -
  KNV92_RS11895 (KNV92_11895) - 2477140..2477514 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  KNV92_RS11900 (KNV92_11900) ybeY 2477495..2477968 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  KNV92_RS11905 (KNV92_11905) - 2477969..2480101 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=576043 KNV92_RS11875 WP_003152982.1 2474617..2475384(-) (recO) [Bacillus velezensis strain WB]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=576043 KNV92_RS11875 WP_003152982.1 2474617..2475384(-) (recO) [Bacillus velezensis strain WB]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGATCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCTAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894