Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KNV92_RS08100 Genome accession   NZ_CP076514
Coordinates   1605837..1606736 (+) Length   299 a.a.
NCBI ID   WP_094246940.1    Uniprot ID   -
Organism   Bacillus velezensis strain WB     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1600837..1611736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV92_RS08080 (KNV92_08080) - 1601527..1603230 (+) 1704 WP_094246941.1 glycosyl transferase -
  KNV92_RS08085 (KNV92_08085) - 1603227..1603508 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  KNV92_RS08090 (KNV92_08090) sucC 1603683..1604840 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  KNV92_RS08095 (KNV92_08095) sucD 1604869..1605771 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  KNV92_RS08100 (KNV92_08100) dprA 1605837..1606736 (+) 900 WP_094246940.1 DNA-processing protein DprA Machinery gene
  KNV92_RS08105 (KNV92_08105) topA 1606918..1608993 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  KNV92_RS08110 (KNV92_08110) trmFO 1609058..1610365 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KNV92_RS08115 (KNV92_08115) xerC 1610435..1611352 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32878.95 Da        Isoelectric Point: 7.5073

>NTDB_id=576027 KNV92_RS08100 WP_094246940.1 1605837..1606736(+) (dprA) [Bacillus velezensis strain WB]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEEIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=576027 KNV92_RS08100 WP_094246940.1 1605837..1606736(+) (dprA) [Bacillus velezensis strain WB]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGAAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365