Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG35_RS02805 Genome accession   NZ_CP094138
Coordinates   588847..589398 (+) Length   183 a.a.
NCBI ID   WP_245019888.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583847..594398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG35_RS02790 (MPG35_02790) cysS 584027..585424 (-) 1398 WP_245019885.1 cysteine--tRNA ligase -
  MPG35_RS02795 (MPG35_02795) murJ 585425..586885 (-) 1461 WP_245019886.1 murein biosynthesis integral membrane protein MurJ -
  MPG35_RS02800 (MPG35_02800) - 586978..588813 (+) 1836 WP_245019887.1 FapA family protein -
  MPG35_RS02805 (MPG35_02805) ruvA 588847..589398 (+) 552 WP_245019888.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG35_RS02810 (MPG35_02810) - 589432..591786 (+) 2355 WP_245019889.1 DUF3519 domain-containing protein -
  MPG35_RS02815 (MPG35_02815) - 591903..592265 (+) 363 WP_245019890.1 hypothetical protein -
  MPG35_RS02820 (MPG35_02820) - 592300..593436 (-) 1137 WP_000462009.1 NAD-binding protein -
  MPG35_RS02825 (MPG35_02825) rpmB 593586..593774 (-) 189 WP_001119000.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20186.69 Da        Isoelectric Point: 7.4687

>NTDB_id=576004 MPG35_RS02805 WP_245019888.1 588847..589398(+) (ruvA) [Helicobacter pylori strain Hpfe037]
MIVGLIGVVEKVSALEAHIEVQGVVYGVQVSMRTSALLETGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSHARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=576004 MPG35_RS02805 WP_245019888.1 588847..589398(+) (ruvA) [Helicobacter pylori strain Hpfe037]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAGTTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTGAAACGGGCCAAAAAGCGCGTTTGAAAATCTTGCAAGTGATTAAAG
AAGATGCGCATCTTCTATACGGATTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAGAGACTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCATGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-182)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.896

100

0.929
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366