Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG35_RS01505 Genome accession   NZ_CP094138
Coordinates   295595..296644 (-) Length   349 a.a.
NCBI ID   WP_245019746.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe037     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290595..301644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG35_RS01485 (MPG35_01485) rpsL 291455..291862 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG35_RS01490 (MPG35_01490) rpsG 291878..292345 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG35_RS01495 (MPG35_01495) fusA 292357..294435 (+) 2079 WP_000101843.1 elongation factor G -
  MPG35_RS01500 (MPG35_01500) - 294972..295406 (+) 435 WP_245019745.1 flagellar protein -
  MPG35_RS01505 (MPG35_01505) waaF 295595..296644 (-) 1050 WP_245019746.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG35_RS01510 (MPG35_01510) hisS 296706..298034 (+) 1329 WP_245019747.1 histidine--tRNA ligase -
  MPG35_RS01515 (MPG35_01515) asd 298021..299061 (+) 1041 WP_245019748.1 aspartate-semialdehyde dehydrogenase -
  MPG35_RS01520 (MPG35_01520) - 299492..300784 (+) 1293 WP_245019749.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39559.46 Da        Isoelectric Point: 9.8452

>NTDB_id=576001 MPG35_RS01505 WP_245019746.1 295595..296644(-) (waaF) [Helicobacter pylori strain Hpfe037]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASHYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLLN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576001 MPG35_RS01505 WP_245019746.1 295595..296644(-) (waaF) [Helicobacter pylori strain Hpfe037]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGACATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCAACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAATTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTCATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATCTTAAAACTCATCAAAGGTTTATTGAAAAACCCTTTATTACTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAGTTGATAGAGCGCATCGCTATTTTGGATTTATTTATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361