Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   KPF79_RS07970 Genome accession   NZ_CP076513
Coordinates   1514032..1514343 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain R19.1157     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509032..1519343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF79_RS07950 (KPF79_07950) ctsE 1509908..1511470 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  KPF79_RS07955 (KPF79_07955) - 1511463..1512050 (-) 588 WP_002810825.1 CDC27 family protein -
  KPF79_RS07960 (KPF79_07960) ctsP 1512047..1512643 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  KPF79_RS07965 (KPF79_07965) ctsD 1512636..1514054 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF79_RS07970 (KPF79_07970) ctsR 1514032..1514343 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  KPF79_RS07975 (KPF79_07975) nifJ 1514367..1517927 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  KPF79_RS07980 (KPF79_07980) - 1518031..1518114 (-) 84 Protein_1556 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=575991 KPF79_RS07970 WP_002779316.1 1514032..1514343(-) (ctsR) [Campylobacter coli strain R19.1157]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=575991 KPF79_RS07970 WP_002779316.1 1514032..1514343(-) (ctsR) [Campylobacter coli strain R19.1157]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553