Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KPF79_RS07390 Genome accession   NZ_CP076513
Coordinates   1392550..1393518 (+) Length   322 a.a.
NCBI ID   WP_002799191.1    Uniprot ID   A0A0Q2L7K2
Organism   Campylobacter coli strain R19.1157     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387550..1398518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF79_RS07365 (KPF79_07365) - 1388405..1389130 (-) 726 WP_052778193.1 phosphatidate cytidylyltransferase -
  KPF79_RS07370 (KPF79_07370) - 1389139..1389477 (-) 339 WP_002777761.1 hypothetical protein -
  KPF79_RS07375 (KPF79_07375) - 1389480..1390787 (-) 1308 WP_057041814.1 NFACT family protein -
  KPF79_RS07380 (KPF79_07380) - 1390850..1391425 (+) 576 WP_002797427.1 molybdenum cofactor guanylyltransferase -
  KPF79_RS07385 (KPF79_07385) - 1391524..1392417 (+) 894 WP_234888882.1 phospholipase A -
  KPF79_RS07390 (KPF79_07390) ceuB 1392550..1393518 (+) 969 WP_002799191.1 ABC transporter permease Machinery gene
  KPF79_RS07395 (KPF79_07395) - 1393511..1394449 (+) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  KPF79_RS07400 (KPF79_07400) - 1394446..1395201 (+) 756 WP_002777772.1 ABC transporter ATP-binding protein -
  KPF79_RS07405 (KPF79_07405) - 1395216..1396205 (+) 990 WP_002825225.1 siderophore ABC transporter substrate-binding protein -
  KPF79_RS07410 (KPF79_07410) - 1396371..1397003 (+) 633 WP_060785290.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35551.38 Da        Isoelectric Point: 9.5069

>NTDB_id=575984 KPF79_RS07390 WP_002799191.1 1392550..1393518(+) (ceuB) [Campylobacter coli strain R19.1157]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=575984 KPF79_RS07390 WP_002799191.1 1392550..1393518(+) (ceuB) [Campylobacter coli strain R19.1157]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACACAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2L7K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894