Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG13_RS05060 Genome accession   NZ_CP094137
Coordinates   1061967..1063142 (+) Length   391 a.a.
NCBI ID   WP_245082539.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056967..1068142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG13_RS05035 (MPG13_05035) - 1057295..1058191 (+) 897 WP_231227193.1 response regulator -
  MPG13_RS05040 (MPG13_05040) - 1058417..1059283 (+) 867 WP_245084324.1 5'-3' exonuclease -
  MPG13_RS05045 (MPG13_05045) - 1059305..1060555 (-) 1251 WP_245082533.1 outer membrane family protein -
  MPG13_RS05050 (MPG13_05050) - 1060723..1061589 (+) 867 WP_245082536.1 DnaJ C-terminal domain-containing protein -
  MPG13_RS05055 (MPG13_05055) - 1061599..1061970 (+) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG13_RS05060 (MPG13_05060) rarA 1061967..1063142 (+) 1176 WP_245082539.1 replication-associated recombination protein A Machinery gene
  MPG13_RS05065 (MPG13_05065) fur 1063303..1063755 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG13_RS05070 (MPG13_05070) - 1063775..1064272 (-) 498 WP_000780271.1 DUF2147 domain-containing protein -
  MPG13_RS05075 (MPG13_05075) - 1064269..1064805 (-) 537 WP_245082542.1 YhcH/YjgK/YiaL family protein -
  MPG13_RS05080 (MPG13_05080) fliY 1064833..1065696 (-) 864 WP_245082558.1 flagellar motor switch protein FliY -
  MPG13_RS05085 (MPG13_05085) fliM 1065700..1066764 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG13_RS05090 (MPG13_05090) - 1066757..1067533 (-) 777 WP_220831328.1 RNA polymerase sigma factor FliA -
  MPG13_RS05095 (MPG13_05095) - 1067511..1067825 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43818.37 Da        Isoelectric Point: 8.1225

>NTDB_id=575975 MPG13_RS05060 WP_245082539.1 1061967..1063142(+) (rarA) [Helicobacter pylori strain Hpfe038]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575975 MPG13_RS05060 WP_245082539.1 1061967..1063142(+) (rarA) [Helicobacter pylori strain Hpfe038]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCTTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCGCACTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCTCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGTGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTATTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394