Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   KPF77_RS07770 Genome accession   NZ_CP076510
Coordinates   1524565..1524876 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain R19.0802     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519565..1529876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF77_RS07750 (KPF77_07750) ctsE 1520432..1521994 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  KPF77_RS07755 (KPF77_07755) - 1521987..1522583 (-) 597 WP_002779313.1 CDC27 family protein -
  KPF77_RS07760 (KPF77_07760) ctsP 1522580..1523176 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  KPF77_RS07765 (KPF77_07765) ctsD 1523169..1524587 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF77_RS07770 (KPF77_07770) ctsR 1524565..1524876 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  KPF77_RS07775 (KPF77_07775) nifJ 1524900..1528460 (-) 3561 WP_002807312.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  KPF77_RS07780 (KPF77_07780) - 1528564..1529202 (-) 639 WP_002781164.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=575968 KPF77_RS07770 WP_002779316.1 1524565..1524876(-) (ctsR) [Campylobacter coli strain R19.0802]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=575968 KPF77_RS07770 WP_002779316.1 1524565..1524876(-) (ctsR) [Campylobacter coli strain R19.0802]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553