Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG13_RS01515 Genome accession   NZ_CP094137
Coordinates   294808..295857 (-) Length   349 a.a.
NCBI ID   WP_245083697.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe038     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 289808..300857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG13_RS01495 (MPG13_01495) rpsL 290826..291233 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG13_RS01500 (MPG13_01500) rpsG 291249..291716 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG13_RS01505 (MPG13_01505) fusA 291728..293806 (+) 2079 WP_245083696.1 elongation factor G -
  MPG13_RS01510 (MPG13_01510) - 294349..294621 (+) 273 WP_000744165.1 hypothetical protein -
  MPG13_RS01515 (MPG13_01515) waaF 294808..295857 (-) 1050 WP_245083697.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG13_RS01520 (MPG13_01520) hisS 295919..297247 (+) 1329 WP_129066513.1 histidine--tRNA ligase -
  MPG13_RS01525 (MPG13_01525) asd 297234..298274 (+) 1041 WP_245083698.1 aspartate-semialdehyde dehydrogenase -
  MPG13_RS01530 (MPG13_01530) - 298685..299857 (+) 1173 WP_245083699.1 DUF874 family protein -
  MPG13_RS01535 (MPG13_01535) - 300102..300845 (-) 744 WP_245083700.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39558.45 Da        Isoelectric Point: 9.6620

>NTDB_id=575963 MPG13_RS01515 WP_245083697.1 294808..295857(-) (waaF) [Helicobacter pylori strain Hpfe038]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLLAHTPNTPKKIGFNPSASYGSAKRWLASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575963 MPG13_RS01515 WP_245083697.1 294808..295857(-) (waaF) [Helicobacter pylori strain Hpfe038]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGACTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCAATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAGTTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCTCGCCCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCTAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTGTTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.791

98.567

0.372