Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   KPF77_RS07050 Genome accession   NZ_CP076510
Coordinates   1383068..1383583 (-) Length   171 a.a.
NCBI ID   WP_002812227.1    Uniprot ID   -
Organism   Campylobacter coli strain R19.0802     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1378068..1388583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF77_RS07035 (KPF77_07035) - 1378184..1379905 (-) 1722 WP_216200810.1 flagellin A -
  KPF77_RS07040 (KPF77_07040) - 1380002..1381816 (-) 1815 WP_216200812.1 motility associated factor glycosyltransferase family protein -
  KPF77_RS07045 (KPF77_07045) - 1381826..1383067 (-) 1242 WP_057991559.1 DUF2920 family protein -
  KPF77_RS07050 (KPF77_07050) ctsG 1383068..1383583 (-) 516 WP_002812227.1 type II secretion system protein Machinery gene
  KPF77_RS07055 (KPF77_07055) tsaD 1383584..1384591 (-) 1008 WP_058001682.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  KPF77_RS07060 (KPF77_07060) - 1384588..1385982 (-) 1395 WP_023890576.1 M99 family carboxypeptidase catalytic domain-containing protein -
  KPF77_RS07065 (KPF77_07065) dxr 1385984..1387054 (-) 1071 WP_002838992.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  KPF77_RS07070 (KPF77_07070) - 1387051..1387776 (-) 726 WP_002812238.1 phosphatidate cytidylyltransferase -
  KPF77_RS07075 (KPF77_07075) - 1387785..1388123 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18718.49 Da        Isoelectric Point: 6.4701

>NTDB_id=575960 KPF77_RS07050 WP_002812227.1 1383068..1383583(-) (ctsG) [Campylobacter coli strain R19.0802]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=575960 KPF77_RS07050 WP_002812227.1 1383068..1383583(-) (ctsG) [Campylobacter coli strain R19.0802]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGAGGAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.529

99.415

0.93