Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JP49775_RS07660 Genome accession   NZ_AP017922
Coordinates   1564280..1565959 (-) Length   559 a.a.
NCBI ID   WP_000942203.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP02758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1559280..1570959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JP49775_RS07640 (JP02758_1451) - 1559428..1560702 (-) 1275 WP_000406856.1 dihydrolipoamide acetyltransferase family protein -
  JP49775_RS07645 (JP02758_1452) - 1560715..1561698 (-) 984 WP_001096628.1 alpha-ketoacid dehydrogenase subunit beta -
  JP49775_RS07650 (JP02758_1453) - 1561698..1562690 (-) 993 WP_000568361.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  JP49775_RS07655 (JP02758_1454) lpdA 1562706..1564127 (-) 1422 WP_001291544.1 dihydrolipoyl dehydrogenase -
  JP49775_RS07660 (JP02758_1455) recN 1564280..1565959 (-) 1680 WP_000942203.1 DNA repair protein RecN Machinery gene
  JP49775_RS07665 (JP02758_1456) ahrC 1565975..1566427 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  JP49775_RS07670 (JP02758_1457) - 1566858..1567739 (-) 882 WP_000183384.1 polyprenyl synthetase family protein -
  JP49775_RS07675 (JP02758_1458) - 1567717..1567947 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  JP49775_RS07680 (JP02758_1459) xseA 1567940..1569277 (-) 1338 WP_149036342.1 exodeoxyribonuclease VII large subunit -
  JP49775_RS07685 (JP02758_1460) nusB 1569294..1569683 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  JP49775_RS07690 (JP02758_1461) - 1569743..1570105 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64265.89 Da        Isoelectric Point: 4.7640

>NTDB_id=57596 JP49775_RS07660 WP_000942203.1 1564280..1565959(-) (recN) [Staphylococcus aureus strain JP02758]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=57596 JP49775_RS07660 WP_000942203.1 1564280..1565959(-) (recN) [Staphylococcus aureus strain JP02758]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACAGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCAATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATACGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGCTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442

Multiple sequence alignment