Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   KPF77_RS06095 Genome accession   NZ_CP076510
Coordinates   1195229..1196188 (+) Length   319 a.a.
NCBI ID   WP_002780619.1    Uniprot ID   -
Organism   Campylobacter coli strain R19.0802     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1190229..1201188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF77_RS09670 - 1190715..1190849 (-) 135 WP_002780627.1 hypothetical protein -
  KPF77_RS06060 (KPF77_06060) - 1191035..1191307 (-) 273 WP_002780626.1 hypothetical protein -
  KPF77_RS06065 (KPF77_06065) - 1191404..1192276 (-) 873 WP_004283883.1 sulfatase-like hydrolase/transferase -
  KPF77_RS09675 (KPF77_06070) - 1192185..1192373 (-) 189 WP_032682936.1 sulfatase-like hydrolase/transferase -
  KPF77_RS06075 (KPF77_06075) - 1192383..1192727 (-) 345 WP_002780624.1 hypothetical protein -
  KPF77_RS06080 (KPF77_06080) - 1193214..1193465 (-) 252 WP_216200778.1 hypothetical protein -
  KPF77_RS06085 (KPF77_06085) - 1193522..1194340 (-) 819 WP_216200780.1 hypothetical protein -
  KPF77_RS06090 (KPF77_06090) - 1194352..1195170 (-) 819 WP_002780620.1 glycosyltransferase family 2 protein -
  KPF77_RS06095 (KPF77_06095) waaF 1195229..1196188 (+) 960 WP_002780619.1 lipopolysaccharide heptosyltransferase II Regulator
  KPF77_RS06100 (KPF77_06100) gmhA 1196169..1196729 (-) 561 WP_002780618.1 D-sedoheptulose 7-phosphate isomerase -
  KPF77_RS06105 (KPF77_06105) rfaE1 1196726..1198111 (-) 1386 WP_002780617.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  KPF77_RS06110 (KPF77_06110) rfaD 1198104..1199057 (-) 954 WP_002780616.1 ADP-glyceromanno-heptose 6-epimerase -
  KPF77_RS06115 (KPF77_06115) - 1199054..1199617 (-) 564 WP_057991446.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  KPF77_RS06120 (KPF77_06120) - 1199694..1199993 (+) 300 WP_002777238.1 cytochrome c -
  KPF77_RS06125 (KPF77_06125) - 1200023..1200223 (-) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36674.17 Da        Isoelectric Point: 10.2602

>NTDB_id=575955 KPF77_RS06095 WP_002780619.1 1195229..1196188(+) (waaF) [Campylobacter coli strain R19.0802]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=575955 KPF77_RS06095 WP_002780619.1 1195229..1196188(+) (waaF) [Campylobacter coli strain R19.0802]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.417

100

0.934