Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   KPF76_RS03210 Genome accession   NZ_CP076509
Coordinates   640761..641705 (-) Length   314 a.a.
NCBI ID   WP_216145812.1    Uniprot ID   -
Organism   Campylobacter coli strain R18.1828     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 635761..646705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF76_RS03175 (KPF76_03175) - 635953..636153 (+) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  KPF76_RS03180 (KPF76_03180) - 636183..636482 (-) 300 WP_002777238.1 cytochrome c -
  KPF76_RS03185 (KPF76_03185) - 636559..637122 (+) 564 WP_002787747.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  KPF76_RS03190 (KPF76_03190) rfaD 637119..638072 (+) 954 WP_057030752.1 ADP-glyceromanno-heptose 6-epimerase -
  KPF76_RS03195 (KPF76_03195) rfaE1 638065..639450 (+) 1386 WP_057030751.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  KPF76_RS03200 (KPF76_03200) gmhA 639447..640007 (+) 561 WP_038853888.1 D-sedoheptulose 7-phosphate isomerase -
  KPF76_RS03205 (KPF76_03205) - 640058..640768 (+) 711 WP_235690018.1 glycosyltransferase family 25 protein -
  KPF76_RS03210 (KPF76_03210) waaF 640761..641705 (-) 945 WP_216145812.1 lipopolysaccharide heptosyltransferase II Regulator
  KPF76_RS03215 (KPF76_03215) - 641764..642600 (+) 837 WP_216145814.1 glycosyltransferase family 2 protein -
  KPF76_RS03220 (KPF76_03220) rfbA 642610..643488 (+) 879 WP_002782985.1 glucose-1-phosphate thymidylyltransferase RfbA -
  KPF76_RS03225 (KPF76_03225) rfbB 643492..644523 (+) 1032 WP_002794358.1 dTDP-glucose 4,6-dehydratase -
  KPF76_RS03230 (KPF76_03230) - 644520..644915 (+) 396 WP_002794360.1 FdtA/QdtA family cupin domain-containing protein -
  KPF76_RS03235 (KPF76_03235) - 644912..645583 (+) 672 WP_002794362.1 acetyltransferase -
  KPF76_RS03240 (KPF76_03240) - 645587..646501 (+) 915 WP_002794364.1 hypothetical protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36018.50 Da        Isoelectric Point: 10.2255

>NTDB_id=575934 KPF76_RS03210 WP_216145812.1 640761..641705(-) (waaF) [Campylobacter coli strain R18.1828]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLHKKLGKIDLALS
FRSALSSKIILHILKAKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=575934 KPF76_RS03210 WP_216145812.1 640761..641705(-) (waaF) [Campylobacter coli strain R18.1828]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACACAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCTAAGATCATTTTACACATCCTTAAGGCAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTCGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(106-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.748

99.682

0.825