Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   KPF73_RS07100 Genome accession   NZ_CP076507
Coordinates   1398536..1399717 (-) Length   393 a.a.
NCBI ID   WP_216170232.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R16.0174     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393536..1404717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF73_RS07070 (KPF73_07070) - 1394079..1394420 (+) 342 WP_052782637.1 hypothetical protein -
  KPF73_RS07075 (KPF73_07075) flgM 1394483..1394680 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  KPF73_RS07080 (KPF73_07080) - 1394723..1395157 (+) 435 WP_002779263.1 flagellar protein FlgN -
  KPF73_RS07085 (KPF73_07085) flgK 1395167..1396993 (+) 1827 WP_002851396.1 flagellar hook-associated protein FlgK -
  KPF73_RS07090 (KPF73_07090) - 1397010..1397775 (+) 766 Protein_1389 TIGR02757 family protein -
  KPF73_RS07095 (KPF73_07095) - 1397779..1398543 (+) 765 WP_002851426.1 TSUP family transporter -
  KPF73_RS07100 (KPF73_07100) ctsF 1398536..1399717 (-) 1182 WP_216170232.1 type II secretion system F family protein Machinery gene
  KPF73_RS07105 (KPF73_07105) ctsE 1399714..1401273 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  KPF73_RS07110 (KPF73_07110) ctsX 1401263..1401850 (-) 588 WP_002851370.1 membrane protein Machinery gene
  KPF73_RS07115 (KPF73_07115) ctsP 1401854..1402462 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  KPF73_RS07120 (KPF73_07120) ctsD 1402455..1403867 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF73_RS07125 (KPF73_07125) ctsR 1403845..1404156 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45780.35 Da        Isoelectric Point: 9.0938

>NTDB_id=575914 KPF73_RS07100 WP_216170232.1 1398536..1399717(-) (ctsF) [Campylobacter jejuni strain R16.0174]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKSFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=575914 KPF73_RS07100 WP_216170232.1 1398536..1399717(-) (ctsF) [Campylobacter jejuni strain R16.0174]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGTCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987