Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG50_RS07090 Genome accession   NZ_CP094134
Coordinates   1481746..1483059 (-) Length   437 a.a.
NCBI ID   WP_245032072.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe048     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476746..1488059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG50_RS07060 (MPG50_07060) nadC 1477209..1478030 (-) 822 WP_245032062.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG50_RS07065 (MPG50_07065) nadA 1478030..1479040 (-) 1011 WP_245032064.1 quinolinate synthase NadA -
  MPG50_RS07070 (MPG50_07070) - 1479027..1479833 (-) 807 WP_245032066.1 phosphatidylserine decarboxylase -
  MPG50_RS07075 (MPG50_07075) - 1479830..1480333 (-) 504 WP_245032068.1 helix-turn-helix domain-containing protein -
  MPG50_RS07080 (MPG50_07080) - 1480346..1480840 (-) 495 WP_000544981.1 hypothetical protein -
  MPG50_RS07085 (MPG50_07085) mqnP 1480833..1481675 (-) 843 WP_245032070.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG50_RS07090 (MPG50_07090) comEC/comE3 1481746..1483059 (-) 1314 WP_245032072.1 ComEC/Rec2 family competence protein Machinery gene
  MPG50_RS07095 (MPG50_07095) - 1483056..1484516 (-) 1461 WP_245032074.1 replicative DNA helicase -
  MPG50_RS07100 (MPG50_07100) - 1484527..1485921 (-) 1395 WP_245032076.1 NAD(P)H-hydrate dehydratase -
  MPG50_RS07105 (MPG50_07105) crdS 1485924..1487126 (-) 1203 WP_245033189.1 copper-sensing histidine kinase CrdS -
  MPG50_RS07110 (MPG50_07110) crdR 1487092..1487733 (-) 642 WP_245032078.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50058.94 Da        Isoelectric Point: 9.8861

>NTDB_id=575867 MPG50_RS07090 WP_245032072.1 1481746..1483059(-) (comEC/comE3) [Helicobacter pylori strain Hpfe048]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILWQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFINSAHSSALMGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=575867 MPG50_RS07090 WP_245032072.1 1481746..1483059(-) (comEC/comE3) [Helicobacter pylori strain Hpfe048]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAATG
CTCAAATCTTGTGGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTAACAGCGCTCATTCAAGCGCTTTAATGGGCAATTTATACCGAGCGTTGTTTATAGGGGACAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCCATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTCAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945