Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG50_RS05330 Genome accession   NZ_CP094134
Coordinates   1112463..1114388 (+) Length   641 a.a.
NCBI ID   WP_245031658.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1107463..1119388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG50_RS05305 (MPG50_05305) hofB 1107666..1109099 (-) 1434 WP_245031652.1 outer membrane beta-barrel protein HofB -
  MPG50_RS05310 (MPG50_05310) pyrB 1109396..1110319 (-) 924 WP_245031654.1 aspartate carbamoyltransferase -
  MPG50_RS05315 (MPG50_05315) - 1110386..1110901 (+) 516 WP_000523553.1 hypothetical protein -
  MPG50_RS05320 (MPG50_05320) - 1110901..1111608 (+) 708 WP_245031656.1 TlyA family RNA methyltransferase -
  MPG50_RS05325 (MPG50_05325) - 1111574..1112416 (+) 843 WP_154502069.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG50_RS05330 (MPG50_05330) recP/tkt 1112463..1114388 (+) 1926 WP_245031658.1 transketolase Machinery gene
  MPG50_RS05335 (MPG50_05335) - 1114385..1116721 (+) 2337 WP_245031660.1 PD-(D/E)XK nuclease family protein -
  MPG50_RS05340 (MPG50_05340) - 1116718..1119342 (+) 2625 WP_245031662.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70490.77 Da        Isoelectric Point: 6.8083

>NTDB_id=575853 MPG50_RS05330 WP_245031658.1 1112463..1114388(+) (recP/tkt) [Helicobacter pylori strain Hpfe048]
MQLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAITKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPVEQLSHLRALPNFYAFRPS
DAFENIACMQAALSLNAPSGLILSRQNLPVLDEVSKERVLKGAYVKHHSKNPVITLVASGSEVSLALESAKMLERENIPT
QVVSAPCFDLLVEQDESYLKKLFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLH
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=575853 MPG50_RS05330 WP_245031658.1 1112463..1114388(+) (recP/tkt) [Helicobacter pylori strain Hpfe048]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTAGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACTAACCCTAAATGGCTTAATAGAGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGCGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAGGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTGATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTTTAGCCACAAG
AGTGAGTAATGGCATGATTTTAAACGCTATCACTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCGT
CTAATAACACACAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACACACCAGCCTGTAGAACAATTGAGCCATTTACGCGCTTTACCCAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATATCGCTTGCATGCAAGCAGCGTTAAGTTTGAATGCTCCTAGTGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCGGGTTTTAAAAGGCGCGTATGTCAAACACCACTCTAAAAACCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAAAGCTTTTTAAGGGTAAAGT
CTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGACTACTCCAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, C-terminal domain (Transketolase_C)

(524-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.014

100

0.417