Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | KPG50_RS06070 | Genome accession | NZ_CP076504 |
| Coordinates | 1177444..1178403 (+) | Length | 319 a.a. |
| NCBI ID | WP_002876195.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain R18.1301 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1157116..1187740 | 1177444..1178403 | within | 0 |
Gene organization within MGE regions
Location: 1157116..1187740
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPG50_RS05960 (KPG50_05960) | pglI | 1157116..1158045 (-) | 930 | WP_002867212.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| KPG50_RS05965 (KPG50_05965) | pglH | 1158038..1159117 (-) | 1080 | WP_079264556.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| KPG50_RS05970 (KPG50_05970) | pglK | 1159114..1160808 (-) | 1695 | WP_002869587.1 | ABC-type lipopolysaccharide transporter PglK | - |
| KPG50_RS05975 (KPG50_05975) | galE | 1160802..1161788 (-) | 987 | WP_052778503.1 | UDP-glucose 4-epimerase GalE | - |
| KPG50_RS05980 (KPG50_05980) | - | 1161847..1162641 (-) | 795 | WP_002860221.1 | 3'-5' exonuclease | - |
| KPG50_RS05985 (KPG50_05985) | waaC | 1162708..1163736 (+) | 1029 | WP_002876134.1 | lipopolysaccharide heptosyltransferase I | - |
| KPG50_RS05990 (KPG50_05990) | htrB | 1163726..1164604 (+) | 879 | WP_002876133.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| KPG50_RS05995 (KPG50_05995) | - | 1164601..1165302 (+) | 702 | WP_002876132.1 | glycosyltransferase family 2 protein | - |
| KPG50_RS06000 (KPG50_06000) | rfbA | 1165313..1166191 (+) | 879 | WP_002869595.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| KPG50_RS06005 (KPG50_06005) | rfbB | 1166191..1167222 (+) | 1032 | WP_002860226.1 | dTDP-glucose 4,6-dehydratase | - |
| KPG50_RS06010 (KPG50_06010) | wlaRA | 1167225..1167674 (+) | 450 | WP_002912325.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| KPG50_RS06015 (KPG50_06015) | wlaRB | 1167671..1168075 (+) | 405 | WP_002860228.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| KPG50_RS06020 (KPG50_06020) | - | 1168065..1168532 (+) | 468 | WP_002876184.1 | N-acetyltransferase | - |
| KPG50_RS06025 (KPG50_06025) | - | 1168529..1169056 (+) | 528 | WP_002876185.1 | GNAT family N-acetyltransferase | - |
| KPG50_RS06030 (KPG50_06030) | - | 1169353..1170429 (+) | 1077 | WP_002876186.1 | glycosyltransferase family A protein | - |
| KPG50_RS06035 (KPG50_06035) | wlaRG | 1170426..1171511 (+) | 1086 | WP_216177248.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| KPG50_RS06040 (KPG50_06040) | - | 1171543..1172796 (-) | 1254 | WP_002876189.1 | DUF2972 domain-containing protein | - |
| KPG50_RS06045 (KPG50_06045) | - | 1172793..1173815 (-) | 1023 | WP_002876190.1 | hypothetical protein | - |
| KPG50_RS06050 (KPG50_06050) | - | 1173886..1174659 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| KPG50_RS06055 (KPG50_06055) | wlaTB | 1174652..1175608 (+) | 957 | WP_002860237.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| KPG50_RS06060 (KPG50_06060) | wlaTC | 1175605..1176564 (+) | 960 | WP_002876191.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| KPG50_RS06065 (KPG50_06065) | - | 1176567..1177385 (-) | 819 | WP_002876193.1 | glycosyltransferase family 2 protein | - |
| KPG50_RS06070 (KPG50_06070) | waaF | 1177444..1178403 (+) | 960 | WP_002876195.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| KPG50_RS06075 (KPG50_06075) | gmhA | 1178384..1178944 (-) | 561 | WP_002876196.1 | D-sedoheptulose 7-phosphate isomerase | - |
| KPG50_RS06080 (KPG50_06080) | rfaE1 | 1178941..1180326 (-) | 1386 | WP_002910336.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| KPG50_RS06085 (KPG50_06085) | rfaD | 1180319..1181272 (-) | 954 | WP_002860242.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| KPG50_RS06090 (KPG50_06090) | gmhB | 1181273..1181834 (-) | 562 | Protein_1209 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| KPG50_RS06095 (KPG50_06095) | - | 1181915..1182217 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| KPG50_RS06100 (KPG50_06100) | ccoS | 1182240..1182446 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| KPG50_RS06105 (KPG50_06105) | - | 1182443..1184800 (-) | 2358 | WP_079263609.1 | heavy metal translocating P-type ATPase | - |
| KPG50_RS06110 (KPG50_06110) | rho | 1184909..1186207 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| KPG50_RS06115 (KPG50_06115) | dnaX | 1186211..1187740 (+) | 1530 | WP_002869626.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36607.08 Da Isoelectric Point: 10.2870
>NTDB_id=575851 KPG50_RS06070 WP_002876195.1 1177444..1178403(+) (waaF) [Campylobacter jejuni strain R18.1301]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR
Nucleotide
Download Length: 960 bp
>NTDB_id=575851 KPG50_RS06070 WP_002876195.1 1177444..1178403(+) (waaF) [Campylobacter jejuni strain R18.1301]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.025 |
99.687 |
0.937 |