Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG21_RS01505 Genome accession   NZ_CP094133
Coordinates   292898..293947 (-) Length   349 a.a.
NCBI ID   WP_245025614.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe049     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 287898..298947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG21_RS01485 (MPG21_01485) rpsL 288610..289017 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG21_RS01490 (MPG21_01490) rpsG 289033..289500 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG21_RS01495 (MPG21_01495) fusA 289512..291590 (+) 2079 WP_245025610.1 elongation factor G -
  MPG21_RS01500 (MPG21_01500) - 292324..292704 (+) 381 WP_245025612.1 flagellar protein -
  MPG21_RS01505 (MPG21_01505) waaF 292898..293947 (-) 1050 WP_245025614.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG21_RS01510 (MPG21_01510) hisS 294009..295337 (+) 1329 WP_245025616.1 histidine--tRNA ligase -
  MPG21_RS01515 (MPG21_01515) asd 295324..296364 (+) 1041 WP_245025618.1 aspartate-semialdehyde dehydrogenase -
  MPG21_RS01520 (MPG21_01520) - 296790..297257 (+) 468 Protein_298 DUF874 family protein -
  MPG21_RS01525 (MPG21_01525) - 297500..298243 (-) 744 WP_014535871.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39553.53 Da        Isoelectric Point: 9.8130

>NTDB_id=575798 MPG21_RS01505 WP_245025614.1 292898..293947(-) (waaF) [Helicobacter pylori strain Hpfe049]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLSN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQIPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575798 MPG21_RS01505 WP_245025614.1 292898..293947(-) (waaF) [Helicobacter pylori strain Hpfe049]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTATACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGTTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGGTAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATCCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGTGCACAAATCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCTTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364