Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG57_RS05420 | Genome accession | NZ_CP094132 |
| Coordinates | 1131752..1132987 (+) | Length | 411 a.a. |
| NCBI ID | WP_245080533.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe051 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1126752..1137987
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG57_RS05405 (MPG57_05405) | - | 1127161..1129095 (+) | 1935 | WP_245080528.1 | type IA DNA topoisomerase | - |
| MPG57_RS07775 | - | 1129095..1129223 (+) | 129 | WP_001185489.1 | hypothetical protein | - |
| MPG57_RS05410 (MPG57_05410) | - | 1129225..1130214 (+) | 990 | WP_245080529.1 | VirB8/TrbF family protein | - |
| MPG57_RS05415 (MPG57_05415) | - | 1130214..1131755 (+) | 1542 | WP_245080530.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| MPG57_RS05420 (MPG57_05420) | comB10 | 1131752..1132987 (+) | 1236 | WP_245080533.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG57_RS05425 (MPG57_05425) | - | 1133057..1133350 (+) | 294 | WP_156584252.1 | hypothetical protein | - |
| MPG57_RS05430 (MPG57_05430) | - | 1133343..1133606 (+) | 264 | WP_000564643.1 | hypothetical protein | - |
| MPG57_RS05435 (MPG57_05435) | - | 1133603..1133902 (+) | 300 | WP_212890959.1 | hypothetical protein | - |
| MPG57_RS05440 (MPG57_05440) | - | 1133902..1134843 (+) | 942 | WP_154547739.1 | ATPase, T2SS/T4P/T4SS family | - |
| MPG57_RS05445 (MPG57_05445) | - | 1134840..1135295 (+) | 456 | WP_245080535.1 | mobilization protein | - |
| MPG57_RS05450 (MPG57_05450) | - | 1135292..1135582 (+) | 291 | WP_140526853.1 | hypothetical protein | - |
| MPG57_RS05455 (MPG57_05455) | - | 1135583..1136139 (+) | 557 | Protein_1065 | hypothetical protein | - |
| MPG57_RS05460 (MPG57_05460) | - | 1136140..1137867 (+) | 1728 | WP_245080537.1 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 46460.53 Da Isoelectric Point: 10.0905
>NTDB_id=575774 MPG57_RS05420 WP_245080533.1 1131752..1132987(+) (comB10) [Helicobacter pylori strain Hpfe051]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKNRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELKKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGFPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKNRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELKKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGFPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK
Nucleotide
Download Length: 1236 bp
>NTDB_id=575774 MPG57_RS05420 WP_245080533.1 1131752..1132987(+) (comB10) [Helicobacter pylori strain Hpfe051]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGACTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAACACCGCTAACGAAGAAGAAAAAAACCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTAAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTTTTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGACAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGACTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAACACCGCTAACGAAGAAGAAAAAAACCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTAAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTTTTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGACAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
54.483 |
70.56 |
0.384 |