Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG57_RS05395 Genome accession   NZ_CP094132
Coordinates   1124397..1124657 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe051     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1119397..1129657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS05365 (MPG57_05365) - 1119773..1120582 (+) 810 WP_245080521.1 flagellar hook-basal body protein -
  MPG57_RS05370 (MPG57_05370) - 1120770..1121216 (-) 447 WP_342370126.1 group I intron-associated PD-(D/E)XK endonuclease -
  MPG57_RS05375 (MPG57_05375) - 1121209..1121358 (-) 150 Protein_1048 DNA cytosine methyltransferase -
  MPG57_RS05380 (MPG57_05380) - 1121413..1122177 (+) 765 WP_220977553.1 hypothetical protein -
  MPG57_RS05385 (MPG57_05385) - 1122188..1124104 (+) 1917 WP_245080526.1 toprim domain-containing protein -
  MPG57_RS05390 (MPG57_05390) - 1124094..1124396 (+) 303 WP_000649842.1 TrbC/VirB2 family protein -
  MPG57_RS05395 (MPG57_05395) comB3 1124397..1124657 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  MPG57_RS05400 (MPG57_05400) - 1124670..1127168 (+) 2499 WP_245080527.1 VirB4 family type IV secretion system protein -
  MPG57_RS05405 (MPG57_05405) - 1127161..1129095 (+) 1935 WP_245080528.1 type IA DNA topoisomerase -
  MPG57_RS07775 - 1129095..1129223 (+) 129 WP_001185489.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=575773 MPG57_RS05395 WP_000602756.1 1124397..1124657(+) (comB3) [Helicobacter pylori strain Hpfe051]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=575773 MPG57_RS05395 WP_000602756.1 1124397..1124657(+) (comB3) [Helicobacter pylori strain Hpfe051]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453