Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   MPG30_RS03620 Genome accession   NZ_CP094131
Coordinates   768364..771189 (+) Length   941 a.a.
NCBI ID   WP_245048330.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 763364..776189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG30_RS03595 (MPG30_03595) - 764462..764686 (-) 225 Protein_693 hypothetical protein -
  MPG30_RS03600 (MPG30_03600) - 764751..765653 (-) 903 WP_245048326.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  MPG30_RS03605 (MPG30_03605) - 765898..766242 (-) 345 WP_001028000.1 hypothetical protein -
  MPG30_RS03610 (MPG30_03610) rsmH 766262..767188 (-) 927 WP_245048328.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  MPG30_RS03615 (MPG30_03615) hopE 767368..768189 (-) 822 WP_153227322.1 Hop family outer membrane protein HopE -
  MPG30_RS03620 (MPG30_03620) uvrA 768364..771189 (+) 2826 WP_245048330.1 excinuclease ABC subunit UvrA Machinery gene
  MPG30_RS03625 (MPG30_03625) flgR 771506..772651 (-) 1146 WP_245048332.1 transcriptional activator FlgR -
  MPG30_RS03630 (MPG30_03630) - 772648..773133 (-) 486 WP_245048334.1 hypothetical protein -
  MPG30_RS03635 (MPG30_03635) gyrA 773133..775619 (-) 2487 WP_245048336.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  MPG30_RS03640 (MPG30_03640) - 775639..776025 (-) 387 WP_001279200.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 104815.69 Da        Isoelectric Point: 7.5165

>NTDB_id=575723 MPG30_RS03620 WP_245048330.1 768364..771189(+) (uvrA) [Helicobacter pylori strain Hpfe052]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKHNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARIGEQFCPTCLEPISSMSASDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENSSRIASAIEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCEYNGIDTALCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCEGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVEELLQNNHSTALYLNGTKKIERPKLELPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKIQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMIVIEHNLDIIKNADYIIDMGPDGGDKGGKIIASGTPLEVAKNCEKTQSYTGKFLALELK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=575723 MPG30_RS03620 WP_245048330.1 768364..771189(+) (uvrA) [Helicobacter pylori strain Hpfe052]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAGGGGGCTAGGGAAAATAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAATTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTTTATACGCTG
AAGGCCAAAGGCGCTATTTAGAGAGTTTGTCCAGCTATGCAAGGCAATTTTTAGACAAAGTGGGTAAACATAATGTGGAT
AAAATTGAAGGCCTAACCCCTGCGATTGCTATTGATCAAAAAACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGATTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCCATCA
GTTCTATGAGCGCGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTAGCCCCCATT
ATTAAAGATAAAAAAGGTTCGTTTAACGATAAATTAGAGAGCTTGCGTTTAAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTAATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG
TTATCAATAGCGAAAATTCTTCACGGATCGCTAGTGCAATAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATCAGGAAGCATTACAGCGAGCATAAGGCATGCTTTAAATGCAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCATTCAATTCGCCTAAAGGGGCGTGCGAGAGCTGTTTGGGTTTGGGGACAAAAT
TCAGCTTAGATATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGAGCGATTAAAGTGATTTTTGGCTATAAC
CGCAGTTATTACGCTCAAATGTTTGAGGGCTTTTGCGAATACAATGGCATTGACACTGCGCTTTGTTTTAACGAATTGAA
TAAAGAGCAACAGGACGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAACAGCCCTTTAAAACGCC
CTTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAGAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCATGCGAGGGGCATCGTTTGAAAGCTTCAAGTTTGAGCGTTCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAGGTCTATCACTTTTTTAATGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TCGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGTTAGGGTATTTGACTTTAGGG
AGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCTAGTCAAATCGGGAGCGGTTTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGTTTGCATGAAAAAGACACACTCAAACTCATCAACACCCTTAGGAATTTGC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGTGGGAGTGTGGAAGAATTATTGCAAAACAACCATTCTACCGC
CTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCTAAATTGGAACTACCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTAGTGTGCATTACTGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATTTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAATTCAAAG
CTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTAGACCAAGCCCCCATAGGCAAAACCC
CACGAAGCAACCCTGCTACTTATACAGGAGTGATGGATGAAATCAGGATTTTATTTGCCGAGCAAAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGTCGTTTTAGCTTTAATGTTAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCACTTTTTGCCTGATGTGTTGGTCCAATGCGATAGCTGTAAGGGCGCTAAATACAACCCTCAAACTTTAG
AAATCAAGGTGAAAGGCAAATCCATTGCCGATGTGTTGAACATGAGCGTAGAAGAAGCCTATGAATTTTTTGCTAAATTC
CCTAAAATCGCTGTGAAGTTAAAAACCCTTATAGATGTGGGCTTAGGCTATATCACTTTAGGGCAAAACGCTACGACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTAGCTAAAGAATTGAGTAAAAAAGACACAGGCAAAACCCTTTATATTTTAG
ATGAGCCTACCACCGGTTTGCATTTTGAAGATGTGAATCACCTTTTACAAGTCTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGATAGTGATTGAGCATAATTTAGACATTATCAAAAACGCTGACTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGCGGGAAAATCATTGCGAGCGGCACGCCTTTAGAGGTGGCTAAAAATTGTGAAAAAACCCAAAGCTATACGGGAA
AATTTTTAGCTTTGGAATTGAAATAG

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(137-243)

ABC transporter (ABC_tran)

(621-857)

UvrA DNA-binding domain (UvrA_DNA-bind)

(297-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

49.843

100

0.507
  uvrA Streptococcus pneumoniae TIGR4

49.843

100

0.507
  uvrA Streptococcus pneumoniae D39

49.843

100

0.507