Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG30_RS01530 Genome accession   NZ_CP094131
Coordinates   298881..299930 (-) Length   349 a.a.
NCBI ID   WP_245048014.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe052     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 293881..304930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG30_RS01510 (MPG30_01510) rpsL 294849..295256 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG30_RS01515 (MPG30_01515) rpsG 295272..295739 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG30_RS01520 (MPG30_01520) fusA 295751..297829 (+) 2079 WP_000101843.1 elongation factor G -
  MPG30_RS01525 (MPG30_01525) - 298367..298693 (+) 327 WP_000744162.1 hypothetical protein -
  MPG30_RS01530 (MPG30_01530) waaF 298881..299930 (-) 1050 WP_245048014.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG30_RS01535 (MPG30_01535) hisS 299992..301320 (+) 1329 WP_231265383.1 histidine--tRNA ligase -
  MPG30_RS01540 (MPG30_01540) asd 301307..302347 (+) 1041 WP_245048016.1 aspartate-semialdehyde dehydrogenase -
  MPG30_RS01545 (MPG30_01545) - 302778..303950 (+) 1173 WP_245048018.1 DUF874 family protein -
  MPG30_RS01550 (MPG30_01550) - 304187..304930 (-) 744 WP_245048020.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39510.32 Da        Isoelectric Point: 9.7445

>NTDB_id=575719 MPG30_RS01530 WP_245048014.1 298881..299930(-) (waaF) [Helicobacter pylori strain Hpfe052]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLTFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNSLLSN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQIPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575719 MPG30_RS01530 WP_245048014.1 298881..299930(-) (waaF) [Helicobacter pylori strain Hpfe052]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTATTCCTAAGCCATGCGATAATTTCTGCCCCAAAAGAGT
ATCATCAAGTGGAGAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGACCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACTCCTTATTATCCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAATCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364