Detailed information NTG0575680

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPF99_RS02590
• Genome accession: NZ_CP094130
• Coordinates: 525203..526258 (-)
• Length: 351 a.a.
• NCBI ID: WP_245059317.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe053
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 520203..531258

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF99_RS02565 (MPF99_02565)	-	520749..522161 (-)	1413	WP_245059308.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF99_RS02570 (MPF99_02570)	comB10	522231..523367 (-)	1137	WP_245059310.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF99_RS02575 (MPF99_02575)	comB9	523360..524322 (-)	963	WP_245059313.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF99_RS02580 (MPF99_02580)	comB8	524322..525065 (-)	744	WP_245059315.1	virB8 family protein	Machinery gene
MPF99_RS02585 (MPF99_02585)	comB7	525062..525187 (-)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
MPF99_RS02590 (MPF99_02590)	comB6	525203..526258 (-)	1056	WP_245059317.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF99_RS02595 (MPF99_02595)	-	526266..527261 (-)	996	WP_245059563.1	PDZ domain-containing protein	-
MPF99_RS02600 (MPF99_02600)	-	527261..527554 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPF99_RS02605 (MPF99_02605)	panD	527565..527915 (-)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPF99_RS02610 (MPF99_02610)	-	527905..530127 (-)	2223	WP_245059319.1	ATP-dependent Clp protease ATP-binding subunit	-
MPF99_RS02615 (MPF99_02615)	-	530127..530402 (-)	276	WP_000784915.1	ATP-dependent Clp protease adaptor ClpS	-
MPF99_RS02620 (MPF99_02620)	-	530422..530835 (-)	414	WP_245059321.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39840.83 Da
• Isoelectric Point: 8.5786

>NTDB_id=575680 MPF99_RS02590 WP_245059317.1 525203..526258(-) (comB6) [Helicobacter pylori strain Hpfe053]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNMSVTKALIDAHMQEKEDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=575680 MPF99_RS02590 WP_245059317.1 525203..526258(-) (comB6) [Helicobacter pylori strain Hpfe053]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCACCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAGACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACATGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAAGAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGTGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACCAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterProScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972