Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG85_RS05310 Genome accession   NZ_CP094129
Coordinates   1102353..1104278 (+) Length   641 a.a.
NCBI ID   WP_245050203.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097353..1109278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS05285 (MPG85_05285) hofB 1097549..1098988 (-) 1440 WP_245050200.1 outer membrane beta-barrel protein HofB -
  MPG85_RS05290 (MPG85_05290) pyrB 1099286..1100209 (-) 924 WP_245050201.1 aspartate carbamoyltransferase -
  MPG85_RS05295 (MPG85_05295) - 1100276..1100791 (+) 516 WP_000523557.1 hypothetical protein -
  MPG85_RS05300 (MPG85_05300) - 1100791..1101498 (+) 708 WP_245050202.1 TlyA family RNA methyltransferase -
  MPG85_RS05305 (MPG85_05305) - 1101464..1102306 (+) 843 WP_000931624.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG85_RS05310 (MPG85_05310) recP/tkt 1102353..1104278 (+) 1926 WP_245050203.1 transketolase Machinery gene
  MPG85_RS05315 (MPG85_05315) - 1104275..1106611 (+) 2337 WP_245050204.1 PD-(D/E)XK nuclease family protein -
  MPG85_RS05320 (MPG85_05320) - 1106608..1109121 (+) 2514 WP_245050205.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70419.65 Da        Isoelectric Point: 6.8082

>NTDB_id=575653 MPG85_RS05310 WP_245050203.1 1102353..1104278(+) (recP/tkt) [Helicobacter pylori strain Hpfe054]
MRLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLGDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESTSLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFVAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKHHSKNPVITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSIENITTQAKRLLH
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=575653 MPG85_RS05310 WP_245050203.1 1102353..1104278(+) (recP/tkt) [Helicobacter pylori strain Hpfe054]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGTTGCGCTTTTTGTGTGCGGACATGATAGA
TAGGGCTAATAGCGGGCATCCTGGCGTGTGCTTGGGACTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGAGACAGACTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGGAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCACTTCTTTAGCCGGTCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAGGTCAAGATGCGGTTTGTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCTTAAA
TAAAGAAGTGTTGAAACAATCCAAAGAAAACGCTCAAATCAATCCTAATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCTTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGTGCCATTAATTACCCCGTTTTCAAAAAAGGCGAATCTTTAGCCACGAG
AGTGAGTAATGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGTGCGGATTTAGCCCCAT
CTAATAACACGCAGTTAAAACATTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGTGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCTATAGAACAATTGAGCCATTTACGCGCTTTGCCCAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGTGGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTCAAACACCACTCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATTCCCACT
CAAGTGGTGAGCGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCATTGAAAACATCACCACTCAAGCTAAAAGGTTACTCCAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.399

100

0.41