Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG85_RS01535 Genome accession   NZ_CP094129
Coordinates   298083..299132 (-) Length   349 a.a.
NCBI ID   WP_245050988.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe054     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 293083..304132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS01515 (MPG85_01515) rpsL 294026..294433 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG85_RS01520 (MPG85_01520) rpsG 294449..294916 (+) 468 WP_001254366.1 30S ribosomal protein S7 -
  MPG85_RS01525 (MPG85_01525) fusA 294928..297006 (+) 2079 WP_000101843.1 elongation factor G -
  MPG85_RS01530 (MPG85_01530) - 297725..297889 (+) 165 WP_000744175.1 hypothetical protein -
  MPG85_RS01535 (MPG85_01535) waaF 298083..299132 (-) 1050 WP_245050988.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG85_RS01540 (MPG85_01540) hisS 299194..300522 (+) 1329 WP_180477921.1 histidine--tRNA ligase -
  MPG85_RS01545 (MPG85_01545) asd 300509..301549 (+) 1041 WP_245050990.1 aspartate-semialdehyde dehydrogenase -
  MPG85_RS01550 (MPG85_01550) - 301980..303023 (+) 1044 Protein_300 DUF874 family protein -
  MPG85_RS01555 (MPG85_01555) - 303254..303997 (-) 744 WP_245050992.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39667.64 Da        Isoelectric Point: 9.8199

>NTDB_id=575637 MPG85_RS01535 WP_245050988.1 298083..299132(-) (waaF) [Helicobacter pylori strain Hpfe054]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSIMPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575637 MPG85_RS01535 WP_245050988.1 298083..299132(-) (waaF) [Helicobacter pylori strain Hpfe054]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCGGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATTTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCATGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361