Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JP49775_RS03675 Genome accession   NZ_AP017922
Coordinates   768786..769868 (+) Length   360 a.a.
NCBI ID   WP_029550193.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP02758     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763786..774868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JP49775_RS03655 (JP02758_0690) gdpS 764163..765233 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  JP49775_RS03660 (JP02758_0691) - 765551..766606 (+) 1056 WP_000258149.1 glycosyltransferase family 4 protein -
  JP49775_RS03665 (JP02758_0692) - 766771..767412 (-) 642 WP_029550194.1 YigZ family protein -
  JP49775_RS03670 (JP02758_0693) fakB1 767556..768422 (+) 867 WP_000686345.1 fatty acid kinase binding subunit FakB1 -
  JP49775_RS03675 (JP02758_0694) comFA 768786..769868 (+) 1083 WP_029550193.1 DEAD/DEAH box helicase Machinery gene
  JP49775_RS03680 (JP02758_0695) - 769861..770532 (+) 672 WP_149036315.1 ComF family protein -
  JP49775_RS03685 (JP02758_0696) hpf 770596..771168 (+) 573 WP_017328519.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JP49775_RS03690 (JP02758_0697) secA 771582..774113 (+) 2532 WP_000506529.1 preprotein translocase subunit SecA -
  JP49775_RS03695 - 774155..774274 (+) 120 WP_031774844.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42038.52 Da        Isoelectric Point: 9.6802

>NTDB_id=57563 JP49775_RS03675 WP_029550193.1 768786..769868(+) (comFA) [Staphylococcus aureus strain JP02758]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRLDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=57563 JP49775_RS03675 WP_029550193.1 768786..769868(+) (comFA) [Staphylococcus aureus strain JP02758]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTTTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369

Multiple sequence alignment