Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JP49775_RS03590 Genome accession   NZ_AP017922
Coordinates   752202..753173 (+) Length   323 a.a.
NCBI ID   WP_000876311.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP02758     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747202..758173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JP49775_RS03575 (JP02758_0673) nrdI 748275..748673 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  JP49775_RS03580 (JP02758_0674) nrdE 748636..750741 (+) 2106 WP_029550197.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  JP49775_RS03585 (JP02758_0675) nrdF 750861..751832 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  JP49775_RS03590 (JP02758_0677) ceuB 752202..753173 (+) 972 WP_000876311.1 ABC transporter permease Machinery gene
  JP49775_RS03595 (JP02758_0678) - 753160..754116 (+) 957 WP_029550196.1 iron chelate uptake ABC transporter family permease subunit -
  JP49775_RS03600 (JP02758_0679) - 754113..754874 (+) 762 WP_000616865.1 ABC transporter ATP-binding protein -
  JP49775_RS03605 (JP02758_0680) - 754993..756021 (+) 1029 WP_000754459.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  JP49775_RS03610 (JP02758_0681) - 756338..756652 (-) 315 WP_029550195.1 CHY zinc finger protein -
  JP49775_RS03615 (JP02758_0682) murB 756670..757593 (-) 924 WP_000608436.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35558.04 Da        Isoelectric Point: 10.1963

>NTDB_id=57562 JP49775_RS03590 WP_000876311.1 752202..753173(+) (ceuB) [Staphylococcus aureus strain JP02758]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=57562 JP49775_RS03590 WP_000876311.1 752202..753173(+) (ceuB) [Staphylococcus aureus strain JP02758]
ATGAAGTATTTATTAAAGGGAAAAATTTTACTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTAA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTCATCTCATTACGT
ACAAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATATTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCAAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATCAATATTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTTGTG
ACAGTTGGAACTTTACCCTTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
AATTCCTCATACGATGATGTTAGGAGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCATATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474

Multiple sequence alignment