Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KOM10_RS16665 Genome accession   NZ_CP076453
Coordinates   3424478..3425074 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain PM27     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3419478..3430074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM10_RS16650 (KOM10_16610) helD 3419686..3421740 (-) 2055 WP_046043000.1 DNA helicase IV -
  KOM10_RS16655 (KOM10_16615) - 3421865..3422311 (+) 447 WP_004224032.1 YccF domain-containing protein -
  KOM10_RS16660 (KOM10_16620) yccS 3422329..3424464 (+) 2136 WP_252919124.1 YccS family putative transporter -
  KOM10_RS16665 (KOM10_16625) sxy/tfoX 3424478..3425074 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  KOM10_RS16670 (KOM10_16630) sulA 3425423..3425932 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  KOM10_RS16675 (KOM10_16635) ompA 3426285..3427361 (+) 1077 WP_252919125.1 porin OmpA -
  KOM10_RS16680 (KOM10_16640) matP 3427492..3427944 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KOM10_RS16685 (KOM10_16645) - 3428130..3429887 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=575525 KOM10_RS16665 WP_004179217.1 3424478..3425074(-) (sxy/tfoX) [Klebsiella pneumoniae strain PM27]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=575525 KOM10_RS16665 WP_004179217.1 3424478..3425074(-) (sxy/tfoX) [Klebsiella pneumoniae strain PM27]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51