Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG01_RS01525 Genome accession   NZ_CP094124
Coordinates   299482..300531 (-) Length   349 a.a.
NCBI ID   WP_245037909.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe057     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 294482..305531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG01_RS01500 (MPG01_01500) rpsL 295505..295912 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG01_RS01505 (MPG01_01505) rpsG 295928..296395 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG01_RS01510 (MPG01_01510) fusA 296407..298485 (+) 2079 WP_000101843.1 elongation factor G -
  MPG01_RS01515 (MPG01_01515) - 298723..298929 (-) 207 WP_245037906.1 hypothetical protein -
  MPG01_RS01520 (MPG01_01520) - 299022..299294 (+) 273 WP_000744165.1 hypothetical protein -
  MPG01_RS01525 (MPG01_01525) waaF 299482..300531 (-) 1050 WP_245037909.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG01_RS01530 (MPG01_01530) hisS 300593..301921 (+) 1329 WP_245037911.1 histidine--tRNA ligase -
  MPG01_RS01535 (MPG01_01535) asd 301908..302948 (+) 1041 WP_245037913.1 aspartate-semialdehyde dehydrogenase -
  MPG01_RS01540 (MPG01_01540) - 303374..304480 (+) 1107 WP_245037915.1 DUF874 family protein -
  MPG01_RS01545 (MPG01_01545) - 304711..305454 (-) 744 WP_001871592.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39590.46 Da        Isoelectric Point: 9.6620

>NTDB_id=575515 MPG01_RS01525 WP_245037909.1 299482..300531(-) (waaF) [Helicobacter pylori strain Hpfe057]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSSKRWPASYYAEVSAALLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575515 MPG01_RS01525 WP_245037909.1 299482..300531(-) (waaF) [Helicobacter pylori strain Hpfe057]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTACCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCCCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CTCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGTGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.209

98.567

0.367