Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KOM03_RS18340 Genome accession   NZ_CP076450
Coordinates   3726376..3727128 (-) Length   250 a.a.
NCBI ID   WP_060562683.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3721376..3732128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS18315 (KOM03_18315) mreC 3721821..3722684 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  KOM03_RS18320 (KOM03_18320) mreB 3722715..3723728 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KOM03_RS18325 (KOM03_18325) radC 3723820..3724515 (-) 696 WP_007408165.1 DNA repair protein RadC -
  KOM03_RS18330 (KOM03_18330) - 3724547..3725116 (-) 570 WP_007408164.1 Maf family protein -
  KOM03_RS18335 (KOM03_18335) - 3725257..3726249 (-) 993 WP_060562682.1 SPOR domain-containing protein -
  KOM03_RS18340 (KOM03_18340) comC 3726376..3727128 (-) 753 WP_060562683.1 A24 family peptidase Machinery gene
  KOM03_RS18345 (KOM03_18345) - 3727268..3728560 (-) 1293 WP_060562684.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KOM03_RS18350 (KOM03_18350) - 3728619..3731261 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  KOM03_RS18355 (KOM03_18355) - 3731714..3731905 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27253.96 Da        Isoelectric Point: 9.4293

>NTDB_id=575505 KOM03_RS18340 WP_060562683.1 3726376..3727128(-) (comC) [Bacillus velezensis strain GMEKP1]
MLLILFFLGLIFGSFFYTAACRIPFRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=575505 KOM03_RS18340 WP_060562683.1 3726376..3727128(-) (comC) [Bacillus velezensis strain GMEKP1]
GTGCTTTTGATTCTGTTTTTTCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGTTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58