Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KOM03_RS12510 Genome accession   NZ_CP076450
Coordinates   2433895..2434179 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2428895..2439179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS12490 (KOM03_12490) - 2430138..2431046 (+) 909 WP_060561745.1 ketopantoate reductase family protein -
  KOM03_RS12495 (KOM03_12495) - 2431078..2432310 (-) 1233 WP_007409644.1 aminopeptidase -
  KOM03_RS12500 (KOM03_12500) - 2432411..2432545 (-) 135 WP_012117458.1 protein YkpC -
  KOM03_RS12505 (KOM03_12505) mreBH 2432617..2433624 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  KOM03_RS12510 (KOM03_12510) abrB 2433895..2434179 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KOM03_RS12515 (KOM03_12515) - 2434352..2435656 (+) 1305 WP_007409646.1 ATP-binding protein -
  KOM03_RS12520 (KOM03_12520) - 2435658..2436485 (+) 828 WP_060561744.1 gamma-glutamylcyclotransferase family protein -
  KOM03_RS12525 (KOM03_12525) ktrC 2436526..2437191 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  KOM03_RS20605 - 2437583..2438627 (+) 1045 Protein_2426 amidohydrolase family protein -
  KOM03_RS20610 - 2438573..2439073 (+) 501 WP_363316219.1 adenine deaminase C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=575482 KOM03_RS12510 WP_003154557.1 2433895..2434179(+) (abrB) [Bacillus velezensis strain GMEKP1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=575482 KOM03_RS12510 WP_003154557.1 2433895..2434179(+) (abrB) [Bacillus velezensis strain GMEKP1]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543