Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   KOM03_RS12400 Genome accession   NZ_CP076450
Coordinates   2413396..2413992 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2408396..2418992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS12370 (KOM03_12370) - 2408608..2409063 (+) 456 WP_060561754.1 flavodoxin -
  KOM03_RS12375 (KOM03_12375) dapD 2409145..2409855 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  KOM03_RS12380 (KOM03_12380) - 2409926..2411050 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  KOM03_RS12385 (KOM03_12385) - 2411111..2411356 (+) 246 WP_003154596.1 YkuS family protein -
  KOM03_RS12390 (KOM03_12390) - 2411390..2412196 (-) 807 WP_060561753.1 mechanosensitive ion channel family protein -
  KOM03_RS12395 (KOM03_12395) - 2412485..2412943 (+) 459 WP_060561752.1 TlpA disulfide reductase family protein -
  KOM03_RS12400 (KOM03_12400) rok 2413396..2413992 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  KOM03_RS12405 (KOM03_12405) - 2414016..2415008 (-) 993 WP_043021218.1 hypothetical protein -
  KOM03_RS12410 (KOM03_12410) - 2415154..2415756 (+) 603 WP_020955749.1 molybdenum cofactor guanylyltransferase -
  KOM03_RS12415 (KOM03_12415) - 2415808..2416827 (+) 1020 WP_060561751.1 molybdopterin-synthase adenylyltransferase MoeB -
  KOM03_RS12420 (KOM03_12420) glp 2416845..2418137 (+) 1293 WP_060561750.1 gephyrin-like molybdotransferase Glp -
  KOM03_RS12425 (KOM03_12425) mobB 2418098..2418619 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=575481 KOM03_RS12400 WP_012117447.1 2413396..2413992(+) (rok) [Bacillus velezensis strain GMEKP1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=575481 KOM03_RS12400 WP_012117447.1 2413396..2413992(+) (rok) [Bacillus velezensis strain GMEKP1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843