Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KOM03_RS09455 Genome accession   NZ_CP076450
Coordinates   1873380..1874171 (+) Length   263 a.a.
NCBI ID   WP_015239427.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868380..1879171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS09430 (KOM03_09430) - 1870374..1871258 (+) 885 WP_060562258.1 PhzF family phenazine biosynthesis isomerase -
  KOM03_RS09435 (KOM03_09435) - 1871335..1871919 (+) 585 WP_060562259.1 nitroreductase -
  KOM03_RS09440 (KOM03_09440) - 1871959..1872150 (-) 192 WP_003155508.1 YfhD family protein -
  KOM03_RS09445 (KOM03_09445) - 1872221..1872331 (-) 111 WP_003155504.1 YfhE family protein -
  KOM03_RS09450 (KOM03_09450) - 1872389..1873288 (-) 900 WP_060562260.1 TIGR01777 family oxidoreductase -
  KOM03_RS09455 (KOM03_09455) recX 1873380..1874171 (+) 792 WP_015239427.1 recombination regulator RecX Regulator
  KOM03_RS09460 (KOM03_09460) - 1874178..1874492 (+) 315 WP_007408553.1 YfhH family protein -
  KOM03_RS09465 (KOM03_09465) - 1874636..1875829 (+) 1194 WP_101536292.1 MFS transporter -
  KOM03_RS09470 (KOM03_09470) - 1875869..1876258 (-) 390 WP_043020687.1 DUF2606 family protein -
  KOM03_RS09475 (KOM03_09475) - 1876221..1877132 (-) 912 WP_060562261.1 serine protease -
  KOM03_RS09480 (KOM03_09480) - 1877279..1877431 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  KOM03_RS09485 (KOM03_09485) - 1877555..1877824 (+) 270 WP_003155492.1 YfhJ family protein -
  KOM03_RS09490 (KOM03_09490) - 1877957..1878484 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  KOM03_RS09495 (KOM03_09495) - 1878570..1878905 (+) 336 WP_060562262.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30935.10 Da        Isoelectric Point: 5.8035

>NTDB_id=575464 KOM03_RS09455 WP_015239427.1 1873380..1874171(+) (recX) [Bacillus velezensis strain GMEKP1]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=575464 KOM03_RS09455 WP_015239427.1 1873380..1874171(+) (recX) [Bacillus velezensis strain GMEKP1]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAAACGGAGTATGAGAATGACGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGGTTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795