Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KOM03_RS05370 Genome accession   NZ_CP076450
Coordinates   1052675..1052965 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047675..1057965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS05330 (KOM03_05330) darA 1047692..1048021 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  KOM03_RS05335 (KOM03_05335) - 1048034..1048474 (+) 441 WP_004264730.1 DUF327 family protein -
  KOM03_RS05340 (KOM03_05340) holB 1048486..1049475 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  KOM03_RS05345 (KOM03_05345) ricT 1049478..1050305 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  KOM03_RS05350 (KOM03_05350) yabA 1050320..1050679 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  KOM03_RS05355 (KOM03_05355) - 1050740..1051483 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KOM03_RS05360 (KOM03_05360) - 1051470..1051769 (+) 300 WP_060561981.1 GIY-YIG nuclease family protein -
  KOM03_RS05365 (KOM03_05365) rsmI 1051744..1052625 (+) 882 WP_060561980.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KOM03_RS05370 (KOM03_05370) abrB 1052675..1052965 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  KOM03_RS05375 (KOM03_05375) metG 1053449..1055440 (+) 1992 WP_060561979.1 methionine--tRNA ligase -
  KOM03_RS05380 (KOM03_05380) - 1055516..1056283 (+) 768 WP_029326250.1 TatD family hydrolase -
  KOM03_RS05385 (KOM03_05385) - 1056418..1057743 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=575454 KOM03_RS05370 WP_169510469.1 1052675..1052965(-) (abrB) [Bacillus velezensis strain GMEKP1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=575454 KOM03_RS05370 WP_169510469.1 1052675..1052965(-) (abrB) [Bacillus velezensis strain GMEKP1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979