Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG25_RS05345 Genome accession   NZ_CP094121
Coordinates   1128971..1130896 (+) Length   641 a.a.
NCBI ID   WP_245018503.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1123971..1135896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS05320 (MPG25_05320) hofB 1124170..1125609 (-) 1440 Protein_1042 outer membrane beta-barrel protein HofB -
  MPG25_RS05325 (MPG25_05325) pyrB 1125904..1126827 (-) 924 WP_245018501.1 aspartate carbamoyltransferase -
  MPG25_RS05330 (MPG25_05330) - 1126894..1127409 (+) 516 WP_000523557.1 hypothetical protein -
  MPG25_RS05335 (MPG25_05335) - 1127409..1128116 (+) 708 WP_245018502.1 TlyA family RNA methyltransferase -
  MPG25_RS05340 (MPG25_05340) - 1128082..1128924 (+) 843 WP_000931622.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG25_RS05345 (MPG25_05345) recP/tkt 1128971..1130896 (+) 1926 WP_245018503.1 transketolase Machinery gene
  MPG25_RS05350 (MPG25_05350) - 1130893..1133229 (+) 2337 WP_245018504.1 PD-(D/E)XK nuclease family protein -
  MPG25_RS05355 (MPG25_05355) - 1133226..1135742 (+) 2517 WP_245018505.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70418.69 Da        Isoelectric Point: 6.8352

>NTDB_id=575450 MPG25_RS05345 WP_245018503.1 1128971..1130896(+) (recP/tkt) [Helicobacter pylori strain Hpfe059]
MRLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIVSPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKGFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRTLPNFYAFRPS
DAFENTACMQVALSLSAPSGLILSRQNLPVLDKVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALESAKILERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLH
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=575450 MPG25_RS05345 WP_245018503.1 1128971..1130896(+) (recP/tkt) [Helicobacter pylori strain Hpfe059]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGTGCAGATATGATAGA
TAGGGCTAATAGTGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGGGACAGACTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGTCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAGGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAGGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAGCCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTAATGAAAGCTTTATCGTTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGGTTTTGATTTTAGCGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGTGCGGATTTAGCCCCGT
CTAACAACACGCAATTGAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTGGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCTATAGAGCAATTGAGCCATTTACGCACTTTGCCCAATTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGTAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATAAGGTTTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGTAGTGAAGTTTCTTTAGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCGCCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
CTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCCAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418