Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG25_RS01525 Genome accession   NZ_CP094121
Coordinates   300504..301553 (-) Length   349 a.a.
NCBI ID   WP_245018887.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe059     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 295504..306553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS01505 (MPG25_01505) rpsL 296309..296716 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG25_RS01510 (MPG25_01510) rpsG 296732..297199 (+) 468 WP_015086161.1 30S ribosomal protein S7 -
  MPG25_RS01515 (MPG25_01515) fusA 297211..299289 (+) 2079 WP_000101828.1 elongation factor G -
  MPG25_RS01520 (MPG25_01520) - 299994..300317 (+) 324 WP_228839871.1 flagellar protein -
  MPG25_RS01525 (MPG25_01525) waaF 300504..301553 (-) 1050 WP_245018887.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG25_RS01530 (MPG25_01530) hisS 301615..302943 (+) 1329 WP_000632538.1 histidine--tRNA ligase -
  MPG25_RS01535 (MPG25_01535) asd 302930..303970 (+) 1041 WP_245018888.1 aspartate-semialdehyde dehydrogenase -
  MPG25_RS01540 (MPG25_01540) - 304380..305546 (+) 1167 WP_245018889.1 DUF874 family protein -
  MPG25_RS01545 (MPG25_01545) - 305777..306520 (-) 744 WP_014535057.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39510.38 Da        Isoelectric Point: 9.7547

>NTDB_id=575435 MPG25_RS01525 WP_245018887.1 300504..301553(-) (waaF) [Helicobacter pylori strain Hpfe059]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNSHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIIAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTRTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIECIATLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575435 MPG25_RS01525 WP_245018887.1 300504..301553(-) (waaF) [Helicobacter pylori strain Hpfe059]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAACTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAGCCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTCTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCGCACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367