Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KOM03_RS00425 Genome accession   NZ_CP076450
Coordinates   76299..76943 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain GMEKP1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 71299..81943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS00390 (KOM03_00390) - 72484..72915 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  KOM03_RS00395 (KOM03_00395) - 72915..73256 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  KOM03_RS00400 (KOM03_00400) - 73249..74730 (+) 1482 WP_060561879.1 Na+/H+ antiporter subunit D -
  KOM03_RS00405 (KOM03_00405) - 74736..75212 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  KOM03_RS00410 (KOM03_00410) - 75212..75496 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  KOM03_RS00415 (KOM03_00415) mnhG 75480..75854 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  KOM03_RS00420 (KOM03_00420) - 75894..76277 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  KOM03_RS00425 (KOM03_00425) comA 76299..76943 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  KOM03_RS00430 (KOM03_00430) comP 77024..79375 (-) 2352 WP_269461318.1 histidine kinase Regulator
  KOM03_RS00435 (KOM03_00435) comX 79353..79523 (-) 171 WP_015418105.1 competence pheromone ComX -
  KOM03_RS00440 (KOM03_00440) - 79520..80449 (-) 930 WP_231945405.1 polyprenyl synthetase family protein -
  KOM03_RS00445 (KOM03_00445) degQ 80580..80720 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  KOM03_RS00450 (KOM03_00450) - 81185..81526 (+) 342 WP_060561880.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=575435 KOM03_RS00425 WP_003152052.1 76299..76943(-) (comA) [Bacillus velezensis strain GMEKP1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=575435 KOM03_RS00425 WP_003152052.1 76299..76943(-) (comA) [Bacillus velezensis strain GMEKP1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAGCAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864