Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   I653_RS15135 Genome accession   NC_020832
Coordinates   3027997..3028641 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022997..3033641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS15100 (I653_15220) mrpB 3024190..3024621 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  I653_RS15105 (I653_15225) mrpC 3024621..3024962 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  I653_RS15110 (I653_15230) mrpD 3024955..3026436 (+) 1482 WP_015384516.1 Na+/H+ antiporter subunit D -
  I653_RS15115 (I653_15235) mrpE 3026442..3026918 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  I653_RS15120 (I653_15240) mrpF 3026918..3027202 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  I653_RS15125 (I653_15245) mnhG 3027186..3027560 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  I653_RS15130 (I653_15250) yuxO 3027599..3027979 (-) 381 WP_015483631.1 hotdog fold thioesterase -
  I653_RS15135 (I653_15255) comA 3027997..3028641 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  I653_RS15140 (I653_15260) comP 3028722..3031022 (-) 2301 WP_015483632.1 histidine kinase Regulator
  I653_RS15145 (I653_15265) comX 3031034..3031198 (-) 165 WP_015384519.1 competence pheromone ComX -
  I653_RS15150 (I653_15270) - 3031211..3032071 (-) 861 WP_015483633.1 polyprenyl synthetase family protein -
  I653_RS15155 (I653_15275) degQ 3032256..3032396 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  I653_RS21505 - 3032618..3032680 (+) 63 Protein_3039 hypothetical protein -
  I653_RS15160 (I653_15280) - 3032858..3033226 (+) 369 WP_015483634.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=57542 I653_RS15135 WP_003220716.1 3027997..3028641(-) (comA) [Bacillus subtilis subsp. subtilis str. BAB-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=57542 I653_RS15135 WP_003220716.1 3027997..3028641(-) (comA) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment