Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG74_RS01740 Genome accession   NZ_CP094120
Coordinates   340370..341419 (-) Length   349 a.a.
NCBI ID   WP_245069796.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe061     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 335370..346419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG74_RS01715 (MPG74_01715) rpsL 335797..336204 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG74_RS01720 (MPG74_01720) rpsG 336220..336687 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG74_RS01725 (MPG74_01725) fusA 336699..338777 (+) 2079 WP_245069795.1 elongation factor G -
  MPG74_RS01730 (MPG74_01730) - 339315..339680 (+) 366 Protein_333 flagellar protein -
  MPG74_RS01735 (MPG74_01735) - 339858..340181 (+) 324 WP_228839871.1 flagellar protein -
  MPG74_RS01740 (MPG74_01740) waaF 340370..341419 (-) 1050 WP_245069796.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG74_RS01745 (MPG74_01745) hisS 341481..342809 (+) 1329 WP_245069797.1 histidine--tRNA ligase -
  MPG74_RS01750 (MPG74_01750) asd 342796..343836 (+) 1041 WP_245069798.1 aspartate-semialdehyde dehydrogenase -
  MPG74_RS01755 (MPG74_01755) - 344248..345369 (+) 1122 WP_245069799.1 DUF874 family protein -
  MPG74_RS01760 (MPG74_01760) - 345605..346348 (-) 744 WP_245069800.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39631.56 Da        Isoelectric Point: 9.8197

>NTDB_id=575398 MPG74_RS01740 WP_245069796.1 340370..341419(-) (waaF) [Helicobacter pylori strain Hpfe061]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575398 MPG74_RS01740 WP_245069796.1 340370..341419(-) (waaF) [Helicobacter pylori strain Hpfe061]
ATGAGTGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACTCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAACGATCGTGTTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361