Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG78_RS06625 | Genome accession | NZ_CP094119 |
| Coordinates | 1385906..1387141 (+) | Length | 411 a.a. |
| NCBI ID | WP_245040009.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe064 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1380906..1392141
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG78_RS06610 (MPG78_06610) | - | 1381318..1383252 (+) | 1935 | WP_245041173.1 | type IA DNA topoisomerase | - |
| MPG78_RS07770 | - | 1383252..1383380 (+) | 129 | WP_001185489.1 | hypothetical protein | - |
| MPG78_RS06615 (MPG78_06615) | - | 1383382..1384368 (+) | 987 | WP_245040005.1 | VirB8/TrbF family protein | - |
| MPG78_RS06620 (MPG78_06620) | - | 1384368..1385909 (+) | 1542 | WP_245040007.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| MPG78_RS06625 (MPG78_06625) | comB10 | 1385906..1387141 (+) | 1236 | WP_245040009.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG78_RS06630 (MPG78_06630) | - | 1387211..1387504 (+) | 294 | WP_000671327.1 | hypothetical protein | - |
| MPG78_RS06635 (MPG78_06635) | - | 1387497..1387760 (+) | 264 | WP_220942401.1 | hypothetical protein | - |
| MPG78_RS06640 (MPG78_06640) | - | 1387757..1388056 (+) | 300 | WP_245040017.1 | hypothetical protein | - |
| MPG78_RS06645 (MPG78_06645) | - | 1388056..1388943 (+) | 888 | WP_245040020.1 | ATPase, T2SS/T4P/T4SS family | - |
| MPG78_RS06650 (MPG78_06650) | - | 1388993..1389448 (+) | 456 | WP_245040022.1 | mobilization protein | - |
| MPG78_RS06655 (MPG78_06655) | - | 1389445..1389735 (+) | 291 | WP_075658071.1 | hypothetical protein | - |
| MPG78_RS06660 (MPG78_06660) | - | 1389736..1390293 (+) | 558 | WP_245040024.1 | hypothetical protein | - |
| MPG78_RS06665 (MPG78_06665) | - | 1390294..1392021 (+) | 1728 | WP_219026171.1 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 46426.51 Da Isoelectric Point: 10.0008
>NTDB_id=575382 MPG78_RS06625 WP_245040009.1 1385906..1387141(+) (comB10) [Helicobacter pylori strain Hpfe064]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGILHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGILHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK
Nucleotide
Download Length: 1236 bp
>NTDB_id=575382 MPG78_RS06625 WP_245040009.1 1385906..1387141(+) (comB10) [Helicobacter pylori strain Hpfe064]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGACGATTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACACTTATTAAACCGCAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCATACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACAGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGACGATTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACACTTATTAAACCGCAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCATACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACAGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
54.483 |
70.56 |
0.384 |