Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   I653_RS13175 Genome accession   NC_020832
Coordinates   2639192..2639938 (-) Length   248 a.a.
NCBI ID   WP_015384274.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2634192..2644938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS13150 (I653_13355) mreC 2634598..2635470 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  I653_RS13155 (I653_13360) mreB 2635501..2636514 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  I653_RS13160 (I653_13365) radC 2636606..2637301 (-) 696 WP_015384272.1 DNA repair protein RadC -
  I653_RS13165 (I653_13370) maf 2637338..2637907 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  I653_RS13170 (I653_13375) spoIIB 2638060..2639058 (-) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  I653_RS13175 (I653_13380) comC 2639192..2639938 (-) 747 WP_015384274.1 A24 family peptidase Machinery gene
  I653_RS13180 (I653_13385) folC 2640078..2641370 (-) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  I653_RS13185 (I653_13390) valS 2641430..2644072 (-) 2643 WP_015483523.1 valine--tRNA ligase -
  I653_RS13190 (I653_13395) - 2644520..2644711 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26378.00 Da        Isoelectric Point: 9.6195

>NTDB_id=57537 I653_RS13175 WP_015384274.1 2639192..2639938(-) (comC) [Bacillus subtilis subsp. subtilis str. BAB-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHMISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=57537 I653_RS13175 WP_015384274.1 2639192..2639938(-) (comC) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATATGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGAGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98

Multiple sequence alignment