Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KMZ16_RS16260 Genome accession   NZ_CP076445
Coordinates   3120517..3121161 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115517..3126161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS16225 (KMZ16_16075) mrpB 3116709..3117140 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KMZ16_RS16230 (KMZ16_16080) mrpC 3117140..3117481 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KMZ16_RS16235 (KMZ16_16085) mrpD 3117474..3118955 (+) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  KMZ16_RS16240 (KMZ16_16090) mrpE 3118961..3119437 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KMZ16_RS16245 (KMZ16_16095) mrpF 3119437..3119721 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KMZ16_RS16250 (KMZ16_16100) mnhG 3119705..3120079 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  KMZ16_RS16255 (KMZ16_16105) yuxO 3120118..3120498 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  KMZ16_RS16260 (KMZ16_16110) comA 3120517..3121161 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KMZ16_RS16265 (KMZ16_16115) comP 3121242..3123554 (-) 2313 WP_069703660.1 histidine kinase Regulator
  KMZ16_RS16270 (KMZ16_16120) comX 3123570..3123791 (-) 222 WP_014480704.1 competence pheromone ComX -
  KMZ16_RS16275 (KMZ16_16125) - 3123793..3124656 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  KMZ16_RS16280 (KMZ16_16130) degQ 3124842..3124982 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KMZ16_RS16285 - 3125204..3125266 (+) 63 Protein_3148 hypothetical protein -
  KMZ16_RS16290 (KMZ16_16135) - 3125444..3125812 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=575365 KMZ16_RS16260 WP_003220716.1 3120517..3121161(-) (comA) [Bacillus subtilis subsp. subtilis strain ps4100]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=575365 KMZ16_RS16260 WP_003220716.1 3120517..3121161(-) (comA) [Bacillus subtilis subsp. subtilis strain ps4100]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1