Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG78_RS01520 Genome accession   NZ_CP094119
Coordinates   298425..299474 (-) Length   349 a.a.
NCBI ID   WP_245040425.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe064     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 293425..304474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG78_RS01500 (MPG78_01500) rpsL 294325..294732 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG78_RS01505 (MPG78_01505) rpsG 294748..295215 (+) 468 WP_033772019.1 30S ribosomal protein S7 -
  MPG78_RS01510 (MPG78_01510) fusA 295227..297305 (+) 2079 WP_021305209.1 elongation factor G -
  MPG78_RS01515 (MPG78_01515) - 297855..298235 (+) 381 WP_000744161.1 hypothetical protein -
  MPG78_RS01520 (MPG78_01520) waaF 298425..299474 (-) 1050 WP_245040425.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG78_RS01525 (MPG78_01525) hisS 299535..300863 (+) 1329 WP_245040434.1 histidine--tRNA ligase -
  MPG78_RS01530 (MPG78_01530) asd 300850..301890 (+) 1041 WP_245040437.1 aspartate-semialdehyde dehydrogenase -
  MPG78_RS01535 (MPG78_01535) - 302329..303471 (+) 1143 WP_245040444.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39465.22 Da        Isoelectric Point: 9.7445

>NTDB_id=575357 MPG78_RS01520 WP_245040425.1 298425..299474(-) (waaF) [Helicobacter pylori strain Hpfe064]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSILPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSN
NAYNLCGKTSIEELVERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575357 MPG78_RS01520 WP_245040425.1 298425..299474(-) (waaF) [Helicobacter pylori strain Hpfe064]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCGGCTTTTTTGCTTTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCATTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGTTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATCCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGGTAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCCAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361