Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KMZ16_RS11165 Genome accession   NZ_CP076445
Coordinates   2196782..2197402 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2191782..2202402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS11125 (KMZ16_11025) ptsA 2192913..2193419 (-) 507 WP_069703931.1 PTS glucose transporter subunit IIA -
  KMZ16_RS11130 (KMZ16_11030) ypqA 2193557..2193976 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  KMZ16_RS11135 (KMZ16_11035) sppG 2193997..2194374 (-) 378 WP_014477159.1 YppG family protein -
  KMZ16_RS11140 (KMZ16_11040) yppF 2194562..2194750 (+) 189 WP_003230690.1 YppF family protein -
  KMZ16_RS11145 (KMZ16_11045) yppE 2194789..2195160 (-) 372 WP_015714151.1 YppE family protein -
  KMZ16_RS11150 (KMZ16_11050) yppD 2195206..2195451 (-) 246 WP_015251831.1 YppD family protein -
  KMZ16_RS11155 (KMZ16_11055) sspM 2195650..2195754 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KMZ16_RS11160 (KMZ16_11060) yppC 2195779..2196741 (-) 963 WP_032729081.1 DUF2515 domain-containing protein -
  KMZ16_RS11165 (KMZ16_11065) recU 2196782..2197402 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KMZ16_RS11170 (KMZ16_11070) ponA 2197424..2200168 (+) 2745 WP_069703902.1 PBP1A family penicillin-binding protein -
  KMZ16_RS11175 (KMZ16_11075) ypoC 2200244..2200738 (-) 495 WP_029726783.1 YpoC family protein -
  KMZ16_RS11180 (KMZ16_11080) nth 2200735..2201394 (-) 660 WP_029726782.1 endonuclease III -
  KMZ16_RS11185 (KMZ16_11085) dnaD 2201413..2202111 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=575340 KMZ16_RS11165 WP_004399067.1 2196782..2197402(+) (recU) [Bacillus subtilis subsp. subtilis strain ps4100]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=575340 KMZ16_RS11165 WP_004399067.1 2196782..2197402(+) (recU) [Bacillus subtilis subsp. subtilis strain ps4100]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1