Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CTB89_RS10380 Genome accession   NZ_AP017891
Coordinates   2052435..2053253 (-) Length   272 a.a.
NCBI ID   WP_001124417.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN3     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2047435..2058253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTB89_RS10355 - 2048528..2049505 (+) 978 WP_000379098.1 metal-dependent hydrolase -
  CTB89_RS10365 - 2049766..2050602 (-) 837 WP_000886452.1 hypothetical protein -
  CTB89_RS10370 - 2050611..2052128 (-) 1518 WP_020977393.1 ABC transporter ATP-binding protein -
  CTB89_RS10375 - 2052143..2052457 (-) 315 WP_000435806.1 YfhH family protein -
  CTB89_RS10380 recX 2052435..2053253 (-) 819 WP_001124417.1 recombination regulator RecX Regulator
  CTB89_RS10385 sgtB 2053514..2054323 (-) 810 WP_000830379.1 monofunctional peptidoglycan glycosyltransferase SgtB -
  CTB89_RS10390 - 2054663..2055178 (-) 516 WP_020977394.1 type 1 glutamine amidotransferase domain-containing protein -
  CTB89_RS10395 - 2055308..2055469 (-) 162 WP_001005407.1 SE1561 family protein -
  CTB89_RS10400 yfkAB 2055693..2056844 (+) 1152 WP_020977395.1 radical SAM/CxCxxxxC motif protein YfkAB -
  CTB89_RS10405 - 2057104..2057634 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32244.13 Da        Isoelectric Point: 5.9211

>NTDB_id=57534 CTB89_RS10380 WP_001124417.1 2052435..2053253(-) (recX) [Staphylococcus aureus strain GN3]
MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
ILYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEMFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=57534 CTB89_RS10380 WP_001124417.1 2052435..2053253(-) (recX) [Staphylococcus aureus strain GN3]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGTTTTAATCTTTTTTTAGATGAACAATTTGAAAT
GGGTATAGATATCGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGATATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAATAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
ATACTATATTTACAAAAAGAAGAGATATCAGAACAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCGGAAAGTTTAAAAAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTATATCAACTTGGTATAGAACCAAATATCATTGAAATGTTTACAGAACTTTATAGAGAACAACAGGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAAGGGCCACAAAATAAGGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAAACCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGCGGTTTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAGAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

99.265

100

0.993

Multiple sequence alignment