Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG34_RS05290 Genome accession   NZ_CP094117
Coordinates   1109669..1111594 (+) Length   641 a.a.
NCBI ID   WP_245105598.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1104669..1116594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS05265 (MPG34_05265) hofB 1104867..1106306 (-) 1440 WP_245105590.1 outer membrane beta-barrel protein HofB -
  MPG34_RS05270 (MPG34_05270) pyrB 1106602..1107525 (-) 924 WP_245105592.1 aspartate carbamoyltransferase -
  MPG34_RS05275 (MPG34_05275) - 1107592..1108107 (+) 516 WP_000523557.1 hypothetical protein -
  MPG34_RS05280 (MPG34_05280) - 1108107..1108814 (+) 708 WP_245105594.1 TlyA family RNA methyltransferase -
  MPG34_RS05285 (MPG34_05285) - 1108780..1109622 (+) 843 WP_245105596.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG34_RS05290 (MPG34_05290) recP/tkt 1109669..1111594 (+) 1926 WP_245105598.1 transketolase Machinery gene
  MPG34_RS05295 (MPG34_05295) - 1111591..1113927 (+) 2337 WP_245105600.1 PD-(D/E)XK nuclease family protein -
  MPG34_RS05300 (MPG34_05300) - 1113924..1116494 (+) 2571 WP_245105603.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70486.73 Da        Isoelectric Point: 6.6104

>NTDB_id=575333 MPG34_RS05290 WP_245105598.1 1109669..1111594(+) (recP/tkt) [Helicobacter pylori strain Hpfe065]
MRLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLGKEAISHKVYCLCGDGD
LQEGISYESASLAGHFNLNNLIVIYDSNQISIEGAINISFSEHVKMRFLAQNWEVLECDGHDYQAIHNALEESKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALESAKMLERENIPT
QVVSVPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=575333 MPG34_RS05290 WP_245105598.1 1109669..1111594(+) (recP/tkt) [Helicobacter pylori strain Hpfe065]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGGGACAGACTAGTTTTTAGCGGAGGGCATGCGAGTGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGTATTGAAATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGGCAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGTGCTTCTTTAGCCGGACACTTCAACCTGAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAGCATGTCAAGATGCGGTTTTTGGCACAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAATCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATTAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACAAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGAAGCGCAGATTTAGCTCCGT
CTAATAATACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAACTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAAGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTCTCTTTGGCTTTAGAGAGTGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGTGCCATGCTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGTCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418