Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG34_RS02840 Genome accession   NZ_CP094117
Coordinates   589780..590331 (+) Length   183 a.a.
NCBI ID   WP_245106209.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584780..595331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS02825 (MPG34_02825) cysS 584959..586356 (-) 1398 WP_245106206.1 cysteine--tRNA ligase -
  MPG34_RS02830 (MPG34_02830) murJ 586357..587817 (-) 1461 WP_245106207.1 murein biosynthesis integral membrane protein MurJ -
  MPG34_RS02835 (MPG34_02835) - 587910..589754 (+) 1845 WP_245106208.1 FapA family protein -
  MPG34_RS02840 (MPG34_02840) ruvA 589780..590331 (+) 552 WP_245106209.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG34_RS02845 (MPG34_02845) - 590382..592871 (+) 2490 WP_245106210.1 DUF3519 domain-containing protein -
  MPG34_RS02850 (MPG34_02850) - 593286..594011 (-) 726 WP_000646751.1 NYN domain-containing protein -
  MPG34_RS02855 (MPG34_02855) ruvC 594142..594624 (+) 483 WP_180477693.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20233.84 Da        Isoelectric Point: 9.4311

>NTDB_id=575321 MPG34_RS02840 WP_245106209.1 589780..590331(+) (ruvA) [Helicobacter pylori strain Hpfe065]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDVHLLYGFLEENEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTRNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575321 MPG34_RS02840 WP_245106209.1 589780..590331(+) (ruvA) [Helicobacter pylori strain Hpfe065]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGTGCATCTTTTATATGGGTTTTTAGAAGAGAACGAAAAAATCCTCTTTGAGAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTACGCGCAATGAAGTCTTTTTAGCCTTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(140-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361