Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG34_RS00010 Genome accession   NZ_CP094117
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245105923.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe065     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS00005 (MPG34_00005) dnaA 1..1368 (+) 1368 WP_058339260.1 chromosomal replication initiator protein DnaA -
  MPG34_RS00010 (MPG34_00010) comH 1589..3022 (+) 1434 WP_245105923.1 competence protein Machinery gene
  MPG34_RS00020 (MPG34_00020) - 3202..3954 (+) 753 WP_000767551.1 exodeoxyribonuclease III -
  MPG34_RS00025 (MPG34_00025) - 3951..4586 (-) 636 WP_053459828.1 outer membrane protein -
  MPG34_RS00030 (MPG34_00030) - 4590..4943 (-) 354 WP_024116130.1 hypothetical protein -
  MPG34_RS00035 (MPG34_00035) recG 5025..6890 (+) 1866 WP_245105924.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54650.54 Da        Isoelectric Point: 6.8744

>NTDB_id=575307 MPG34_RS00010 WP_245105923.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe065]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHQMPSLNAPIQKPQNKPHSSQQSPQNFPYIESKLGSKNSKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNANINEHDESNENRDSVEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQIEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=575307 MPG34_RS00010 WP_245105923.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe065]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACCGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAATCACACCAAATGCCTTCCTTAAACGCGCCCATACAAAAACCACAAAACAAGCCCCATTCATCGCAACAAT
CTCCTCAAAACTTTCCTTACATAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATATTAACGAAC
ACGATGAAAGCAATGAGAATAGGGATAGTGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGACGATGAAAATTTACAAGCTTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGAGCTAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTAAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAATAG
AGCCAACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTTAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.484

100

0.929