Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KMZ15_RS08105 Genome accession   NZ_CP076444
Coordinates   2098092..2099117 (+) Length   341 a.a.
NCBI ID   WP_223692452.1    Uniprot ID   -
Organism   Mycoavidus sp. HKI     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2093092..2104117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ15_RS08080 (KMZ15_08045) - 2093513..2093770 (-) 258 WP_223692442.1 YfhL family 4Fe-4S dicluster ferredoxin -
  KMZ15_RS08085 (KMZ15_08050) coaD 2093774..2094301 (-) 528 WP_223692444.1 pantetheine-phosphate adenylyltransferase -
  KMZ15_RS08090 (KMZ15_08055) rsmD 2094298..2095002 (-) 705 WP_223692446.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KMZ15_RS08095 (KMZ15_08060) - 2095026..2096384 (-) 1359 WP_223692448.1 pitrilysin family protein -
  KMZ15_RS08100 (KMZ15_08065) - 2096384..2097832 (-) 1449 WP_258134747.1 pitrilysin family protein -
  KMZ15_RS08105 (KMZ15_08070) pilA 2098092..2099117 (+) 1026 WP_223692452.1 signal recognition particle-docking protein FtsY Machinery gene
  KMZ15_RS08110 (KMZ15_08075) - 2099137..2099835 (-) 699 WP_223692455.1 fumarylacetoacetate hydrolase family protein -
  KMZ15_RS08115 (KMZ15_08080) rpoH 2100046..2100897 (+) 852 WP_223694801.1 RNA polymerase sigma factor RpoH -
  KMZ15_RS08120 (KMZ15_08085) clpA 2100921..2103218 (-) 2298 WP_223692457.1 ATP-dependent Clp protease ATP-binding subunit ClpA -
  KMZ15_RS08125 (KMZ15_08090) clpS 2103215..2103529 (-) 315 WP_223692459.1 ATP-dependent Clp protease adapter ClpS -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36307.80 Da        Isoelectric Point: 7.4765

>NTDB_id=575302 KMZ15_RS08105 WP_223692452.1 2098092..2099117(+) (pilA) [Mycoavidus sp. HKI]
MFSFFKNLNKGSTSAPAPSEPENKSKASTPAKNLPSTEPTANRSTSWVTRLKSGLAKTRNSFTSIFAGAKVDEALFEELE
AALLMADTGIEASDFLLSALRQKVSAERLNEGEAVKSALRALLIDLLKPLEHTLVLGRAQPLVMMITGVNGAGKTTSIGK
LAQHLQQHGQSVLLAAGDTFRAAAHEQLALWGERNQINVISQQSGDPAAVIFDALNAARARKLDILMADTAGRLPTQLHL
MEELKKIKRVIGKAMEGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGV
GEQIDDLQPFCAAEFASALLD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=575302 KMZ15_RS08105 WP_223692452.1 2098092..2099117(+) (pilA) [Mycoavidus sp. HKI]
ATGTTTAGCTTCTTCAAAAATCTTAATAAGGGCTCAACATCGGCCCCAGCACCTTCTGAGCCAGAGAATAAATCAAAAGC
CAGCACTCCGGCTAAAAATCTGCCGAGCACAGAGCCTACTGCCAACCGCTCAACTTCCTGGGTAACCCGACTAAAATCAG
GTTTAGCGAAGACGCGTAACAGCTTTACCAGCATTTTTGCTGGCGCAAAAGTCGATGAGGCCCTTTTTGAAGAACTCGAA
GCTGCGCTATTAATGGCCGACACAGGCATTGAAGCGAGCGATTTTCTACTGAGTGCCCTACGTCAGAAAGTAAGCGCTGA
GCGGCTGAATGAAGGTGAAGCCGTCAAATCTGCCTTGCGCGCTCTCTTGATTGATTTATTAAAACCGCTTGAGCACACAT
TAGTACTGGGCCGCGCGCAACCCTTGGTGATGATGATCACGGGCGTCAACGGCGCAGGTAAAACCACCAGCATTGGCAAA
CTGGCCCAACATTTACAGCAACACGGACAGTCTGTGTTGCTGGCCGCAGGTGACACTTTTCGCGCCGCCGCACACGAACA
GCTTGCACTGTGGGGTGAGCGTAATCAGATCAATGTCATTTCACAGCAAAGCGGTGACCCCGCCGCGGTCATTTTCGACG
CCCTTAACGCCGCGCGCGCACGTAAGCTAGATATACTCATGGCGGACACCGCTGGGCGCCTACCGACACAATTACATTTA
ATGGAGGAGTTAAAAAAGATCAAACGCGTCATCGGTAAGGCGATGGAGGGGGCCCCGCACGAAGTGCTGCTGGTGATTGA
CGCAAATACCGGGCAGAATGCCCTCGCGCAGGTGAAAGCTTTTGATGACGCCCTTGGCCTCACCGGATTGATTGTGACCA
AGCTTGATGGCACTGCTAAAGGCGGCATCCTCGCCGCGATTGCGCGACAGCGACCTATCCCCGTGTACTTCATTGGCGTG
GGAGAACAAATTGATGATCTACAGCCGTTTTGCGCCGCAGAGTTCGCCAGCGCGCTGCTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(142-340)

SRP54-type protein, helical bundle domain (SRP54_N)

(60-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

61.238

90.029

0.551